ekg / alignment-and-variant-calling-tutorialLinks
basic walk-throughs for alignment and variant calling from NGS sequencing data
☆218Updated last year
Alternatives and similar repositories for alignment-and-variant-calling-tutorial
Users that are interested in alignment-and-variant-calling-tutorial are comparing it to the libraries listed below
Sorting:
- A structural variation pipeline for short-read sequencing☆200Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- VarDict☆201Updated 2 years ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 11 months ago
- A tool for estimating repeat sizes☆202Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆330Updated 7 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- A genome browser designed for complex structural variants and long reads.☆294Updated 7 months ago
- Reads simulator☆283Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆246Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 7 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆254Updated 5 months ago
- ☆299Updated 3 weeks ago
- Documentation for the ANNOVAR software☆245Updated 5 months ago
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆232Updated 3 years ago
- Bayesian haplotype-based mutation calling☆322Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 6 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- ☆146Updated last month
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆210Updated 3 months ago
- Annotation and Ranking of Structural Variation☆279Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆160Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆202Updated 5 months ago