ekg / alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
☆215Updated 3 months ago
Alternatives and similar repositories for alignment-and-variant-calling-tutorial:
Users that are interested in alignment-and-variant-calling-tutorial are comparing it to the libraries listed below
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆224Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆219Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆236Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated 2 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆541Updated 9 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated 2 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- VarDict☆198Updated last year
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆241Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆327Updated 2 weeks ago
- A structural variation pipeline for short-read sequencing☆187Updated last week
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 7 months ago
- 3D de novo assembly (3D DNA) pipeline☆209Updated last year
- Read trimming tool for Illumina NGS data.☆134Updated 10 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆198Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆357Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆249Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last year
- ☆269Updated 2 months ago
- Annotation and Ranking of Structural Variation☆252Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆240Updated 6 months ago
- parallel fastq-dump wrapper☆290Updated last year
- TransDecoder source☆288Updated 6 months ago
- Genome Assembly and Annotation Service code☆211Updated last year