basic walk-throughs for alignment and variant calling from NGS sequencing data
☆220Jan 10, 2025Updated last year
Alternatives and similar repositories for alignment-and-variant-calling-tutorial
Users that are interested in alignment-and-variant-calling-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆877Apr 20, 2026Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆683Mar 20, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆249Jul 23, 2026Updated 3 weeks ago
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- Applied Computational Genomics Course at UU: Spring 2020☆1,131Apr 5, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- alignment to variation graph inducer☆164Jul 29, 2026Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 5 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 8 months ago
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- tools for working with genome variation graphs☆1,331Updated this week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- An accurate GFF3/GTF lift over pipeline☆548Aug 1, 2023Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆24Dec 24, 2021Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 7 months ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆13Oct 27, 2019Updated 6 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- my PhD thesis☆36Jul 10, 2019Updated 7 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- the pangenome graph builder☆510Jul 24, 2026Updated 3 weeks ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Bayesian haplotype-based mutation calling☆325Feb 13, 2026Updated 6 months ago