ekg / alignment-and-variant-calling-tutorialLinks
basic walk-throughs for alignment and variant calling from NGS sequencing data
☆217Updated 10 months ago
Alternatives and similar repositories for alignment-and-variant-calling-tutorial
Users that are interested in alignment-and-variant-calling-tutorial are comparing it to the libraries listed below
Sorting:
- A tool for estimating repeat sizes☆199Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆328Updated 6 months ago
- A structural variation pipeline for short-read sequencing☆196Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆253Updated 4 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 9 months ago
- VarDict☆201Updated last year
- A genome browser designed for complex structural variants and long reads.☆294Updated 5 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆261Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆354Updated 7 months ago
- Plot structural variant signals from many BAMs and CRAMs☆556Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆253Updated 2 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 6 months ago
- Reads simulator☆281Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆241Updated last week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆201Updated 3 months ago
- Bayesian haplotype-based mutation calling☆321Updated this week
- Annotation and Ranking of Structural Variation☆271Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆276Updated 2 years ago
- ☆295Updated this week
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆207Updated 4 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆159Updated 3 years ago
- Documentation for the ANNOVAR software☆245Updated 4 months ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆244Updated 3 years ago