fast, pure-python interval overlap testing
☆52Oct 2, 2020Updated 5 years ago
Alternatives and similar repositories for interlap
Users that are interested in interlap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆224Jul 4, 2025Updated last year
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 2 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Jul 5, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.☆26Apr 8, 2019Updated 7 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆161Updated this week
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Convenience function for quick and dirty data analysis☆69Oct 30, 2017Updated 8 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆17Nov 19, 2025Updated 8 months ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 2 months ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 5 years ago
- Fast & accurate alignment of barcoded short-reads☆32Jun 29, 2023Updated 3 years ago
- Performant Pythonic GenomicRanges☆493Apr 23, 2026Updated 3 months ago
- Tools for developing and running pipelines with the Genomics API☆24Jan 16, 2020Updated 6 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- open source bagel recipe; let's raise the quality of bagels worldwide☆29Nov 3, 2024Updated last year
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Nov 26, 2018Updated 7 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Nov 19, 2024Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 6 months ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆297Jun 10, 2026Updated 2 months ago
- a flexible tool for microsatellite investigation and visualization☆10Jun 15, 2026Updated 2 months ago