Alternatives and similar repositories for ncbitaxonomy:

Users that are interested in ncbitaxonomy are comparing it to the libraries listed below

• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 4 years ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 7 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆15Updated 2 weeks ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated last year
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• nickloman / poredb
  ☆19Updated 7 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆20Updated 7 months ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated last week
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• rrwick / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆8Updated 6 years ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• chienchi / amplicon_coverage_plot
  interactive barplot for amplicon sequencing
  ☆13Updated last month
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆16Updated last year
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 4 years ago
• xmuyulab / Snipe
  Highly sensitive pathogen detection
  ☆11Updated 4 years ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated last month
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆27Updated last month
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆35Updated 3 months ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆15Updated 6 months ago