rrwick / genome_painter

Related projects: ⓘ

• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• dfguan / cgplot
  comparative genome dot plot viewer
  ☆9Updated 5 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆21Updated 5 months ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated 10 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆14Updated this week
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 5 years ago
• rrwick / Catpac
  a Contig Alignment Tool for Pairwise Assembly Comparison
  ☆12Updated 4 years ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆10Updated 5 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago
• sid-krish / rhometa
  metagenome population recombination rate estimation pipeline
  ☆12Updated last month
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 6 years ago
• bede / kindel
  Indel-aware consensus from aligned BAMs
  ☆20Updated 10 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 5 years ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆17Updated 3 months ago
• ErasmusMC-Bioinformatics / WeFaceNano
  Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
  ☆12Updated 3 years ago
• kakitone / MetaFinisherSC
  This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…
  ☆13Updated 8 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆19Updated last week
• lh3 / gffio
  ☆31Updated last year
• klebgenomics / Kleborate-viz
  Visualisation application for Klebsiella genotypes generated by Kleborate.
  ☆9Updated 3 years ago
• MDU-PHL / bohra
  A pipeline for bioinformatics analysis of bacterial genomes
  ☆18Updated 2 months ago
• ctmrbio / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 2 years ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆22Updated this week
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 3 years ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆33Updated last month
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated last month
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆15Updated this week
• SR-Martin / alvis
  ☆19Updated 9 months ago