Alternatives and similar repositories for hiprfish

Users that are interested in hiprfish are comparing it to the libraries listed below

• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated 2 years ago
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆15Updated 3 years ago
• COMBINE-lab / grouper
  ☆15Updated 6 years ago
• frubino / mgkit
  MGKit: Metagenomics Framework
  ☆17Updated 2 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆16Updated 3 years ago
• donovan-h-parks / biolib
  Python package for common tasks in bioinformatic.
  ☆13Updated last year
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆28Updated 2 years ago
• bhattlab / StrainSifter
  A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
  ☆20Updated 6 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• mdshw5 / hamstring
  Tools for generating and decoding error-correcting DNA barcodes
  ☆16Updated 3 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• yesimon / metax_bakeoff_2019
  ☆17Updated 5 years ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago
• biobakery / metawibele
  MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
  ☆21Updated 2 months ago
• jenniferlu717 / SkewIT
  GC Skew Test for Bacterial Genomes
  ☆28Updated 2 years ago
• nlapier2 / Metalign
  Metalign: efficient alignment-based metagenomic profiling via containment min hash
  ☆33Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 5 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 6 months ago
• VGP / vgp-tools
  ☆28Updated 2 months ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 3 weeks ago
• mocat2 / mocat2
  Latest MOCAT2 version
  ☆19Updated 4 years ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 3 years ago
• kimrutherford / EMBOSS
  MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)
  ☆27Updated 3 years ago
• rchereji / plot2DO
  A tool to assess the quality and distribution of genomic data
  ☆16Updated 3 years ago
• yyoshiaki / VIRTUS2
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆18Updated last year