miRTop / mirtopLinks
command lines tool to annotate miRNAs with a standard mirna/isomir naming
☆19Updated 8 months ago
Alternatives and similar repositories for mirtop
Users that are interested in mirtop are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 8 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Simple web browser to visualize HiC tracks☆19Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆63Updated 5 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- BigWig and BAM utilities☆99Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 8 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- ☆78Updated 11 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago