ghoresh11 / ecoli_genome_collection
genome collection and QC scripts for E coli project
☆8Updated 4 years ago
Alternatives and similar repositories for ecoli_genome_collection:
Users that are interested in ecoli_genome_collection are comparing it to the libraries listed below
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- StrainFinder☆26Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Metagenomic binning suite☆29Updated 2 years ago
- ☆52Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated this week
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- ☆45Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated 5 months ago
- Gene-flank analysis tool☆27Updated 3 months ago
- ☆43Updated 11 months ago
- ☆16Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆22Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆23Updated 6 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago