Chuan-Jiang / ITIS
tool to Identify TE Insertion Sites in genome
☆9Updated 6 years ago
Related projects: ⓘ
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆19Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆11Updated last year
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆20Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆26Updated 6 months ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆14Updated 8 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- End-guided RNA assembler☆15Updated 11 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- a pipeline for accurate detection of methylated cytosine and differentially methylated regions☆9Updated 8 years ago
- ☆13Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 6 months ago
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 2 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- A transposition caller.☆10Updated 11 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- ☆11Updated 5 months ago
- transposable element typing pipeline☆15Updated 6 months ago
- ☆15Updated 4 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- Enabling differential allele-specific analysis☆11Updated 2 years ago
- ☆20Updated 9 months ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated last year