TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data
☆15Apr 9, 2026Updated 3 months ago
Alternatives and similar repositories for TOAST
Users that are interested in TOAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 7 months ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 9 months ago
- ☆14Jan 25, 2023Updated 3 years ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆16Jul 6, 2026Updated 2 weeks ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 9 months ago
- A pipeline to transform images into valuable analysis items☆19Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data☆17Apr 12, 2026Updated 3 months ago
- Identification of persistent local patterns in spatial omics data☆18May 6, 2025Updated last year
- ☆49Apr 8, 2025Updated last year
- Charting spatial ligand-target activity using Renoir (ligand-taRgEt iNteractions acrOss spatIal topogRaphy)☆21Jun 26, 2026Updated 3 weeks ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆20May 28, 2026Updated last month
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆25Jan 20, 2026Updated 6 months ago
- Spatial omics in the browser for hundreds of images at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/☆63Updated this week
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated last month
- distinct: a method for differential analyses via hierarchical permutation tests☆13Dec 4, 2023Updated 2 years ago
- A statistic driven minecraft killaura detection KI☆10Mar 23, 2017Updated 9 years ago
- ☆20Jan 6, 2024Updated 2 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last week
- A Safe Space to Experience Pull Requests☆14Dec 14, 2025Updated 7 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- A Snakemake pipeline for Xenium data analysis.☆25Jul 3, 2026Updated 2 weeks ago
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 8 months ago
- A tool for spatial omics single-modal clustering, multi-modal clustering, slice alignment, cross-modal alignment, multi-modal alignment, …☆20May 6, 2026Updated 2 months ago
- ☆23Jan 10, 2025Updated last year
- ☆47Jun 1, 2026Updated last month
- ☆20Jun 26, 2025Updated last year
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆62May 11, 2026Updated 2 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial omics analysis and visualization library☆27Updated this week
- A conversion tool for converting OpenVDB files to NanoVDB files☆10Nov 25, 2022Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆43Mar 30, 2025Updated last year
- Marginalia 是一个为 Zotero 设计的 AI 聊天插件,让你能够与论文进行智能对话,快速理解和分析学术文献。☆19May 16, 2026Updated 2 months ago
- Source code for our Computer Graphics Forum paper: Synthesizing Geologically Coherent Cave Networks.☆19Jul 7, 2022Updated 4 years ago
- Proximal Optimal Transport Modeling of Population Dynamics (AISTATS 2022)☆24Jun 19, 2023Updated 3 years ago