Alternatives and similar repositories for Interformer

Users that are interested in Interformer are comparing it to the libraries listed below

• carbonsilicon-ai / CarsiDock
  Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…
  ☆91Updated 2 months ago
• jproney / AF2Rank
  ☆108Updated 2 years ago
• schrojunzhang / KarmaDock
  ☆114Updated 10 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆110Updated 4 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆174Updated 4 months ago
• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆87Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆126Updated 3 weeks ago
• ELELAB / RosettaDDGPrediction
  ☆66Updated 4 months ago
• levinthal / Pallatom
  ☆95Updated 3 weeks ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆134Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆78Updated 2 weeks ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 6 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆217Updated 10 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆94Updated last week
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated last month
• yehlincho / BoltzDesign1
  ☆152Updated 2 weeks ago
• jamesgleave / DD_protocol
  Official repository for the Deep Docking protocol
  ☆120Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• ikalvet / heme_binder_diffusion
  ☆130Updated 8 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆102Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆55Updated 3 weeks ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆94Updated 3 months ago
• sc8668 / RTMScore
  ☆101Updated 2 years ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 7 months ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆106Updated 7 months ago
• BioinfoMachineLearning / FlowDock
  A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)
  ☆93Updated 2 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆81Updated last week
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆85Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆107Updated 3 months ago