mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence conditioning in backprop design through AlphaFold-Multimer. Preprint: https://www.biorxiv.org/content/10.1101/2025.09.26.678877v1
☆144Apr 27, 2026Updated 4 months ago
Alternatives and similar repositories for mber-open
Users that are interested in mber-open are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆292Apr 24, 2026Updated 4 months ago
- Official Implementation of IgGM☆231May 28, 2026Updated 3 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆55Jun 22, 2026Updated 3 months ago
- Humanness of de-novo designed proteins☆47May 19, 2025Updated last year
- composite-objective protein design☆370Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- de novo design of high affinity biological binders☆202Sep 1, 2026Updated 3 weeks ago
- Biomolecular co-folding, binder filtering, and nanobody design☆91Jun 28, 2026Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆176Dec 9, 2025Updated 9 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆160Jul 10, 2026Updated 2 months ago
- User friendly and accurate binder design pipeline☆1,228Updated this week
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆136May 10, 2026Updated 4 months ago
- ☆535Mar 5, 2026Updated 6 months ago
- Official repository of PXDesign☆263Dec 31, 2025Updated 8 months ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆86Jul 10, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆86Oct 23, 2024Updated last year
- BoltzGen: Toward Universal Binder Design☆1,060May 28, 2026Updated 3 months ago
- AlphaBind code + model accompanying pre-print☆94Jul 24, 2025Updated last year
- Code for humanization of antibody and nanobody☆96Aug 28, 2025Updated last year
- Potts model-based protein sequence design☆115Jul 1, 2026Updated 2 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆436Updated this week
- ☆147Jun 16, 2026Updated 3 months ago
- A Unified Framework for Predicting, Designing, and Scoring Biomolecular Interactions☆62Updated this week
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆92Sep 10, 2026Updated last week
- Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted bind…☆82Jan 15, 2026Updated 8 months ago
- ☆154May 18, 2026Updated 4 months ago
- ☆259Sep 15, 2026Updated last week
- ☆24Aug 6, 2026Updated last month
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆272Jan 3, 2026Updated 8 months ago
- An Open-source Drug Discovery Engine☆487Sep 2, 2026Updated 2 weeks ago
- ☆21Oct 26, 2024Updated last year
- Feynman-Kac steering for controllable protein diffusion☆38Aug 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆137Oct 30, 2025Updated 10 months ago
- ☆19Mar 19, 2026Updated 6 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆273Sep 9, 2026Updated last week
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆143Jan 28, 2026Updated 7 months ago
- Inference code for RFdiffusion2☆445Apr 3, 2026Updated 5 months ago
- ☆58Apr 1, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago