mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence conditioning in backprop design through AlphaFold-Multimer. Preprint: https://www.biorxiv.org/content/10.1101/2025.09.26.678877v1
☆143Apr 27, 2026Updated 4 months ago
Alternatives and similar repositories for mber-open
Users that are interested in mber-open are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆282Apr 24, 2026Updated 4 months ago
- Official Implementation of IgGM☆223May 28, 2026Updated 3 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆55Jun 22, 2026Updated 2 months ago
- Humanness of de-novo designed proteins☆47May 19, 2025Updated last year
- composite-objective protein design☆363Aug 11, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- de novo design of high affinity biological binders☆198Updated this week
- Biomolecular co-folding, binder filtering, and nanobody design☆90Jun 28, 2026Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆175Dec 9, 2025Updated 8 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆156Jul 10, 2026Updated last month
- User friendly and accurate binder design pipeline☆1,200Aug 12, 2026Updated 3 weeks ago
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆131May 10, 2026Updated 3 months ago
- ☆527Mar 5, 2026Updated 5 months ago
- Official repository of PXDesign☆251Dec 31, 2025Updated 8 months ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆86Jul 10, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆85Oct 23, 2024Updated last year
- BoltzGen: Toward Universal Binder Design☆1,046May 28, 2026Updated 3 months ago
- AlphaBind code + model accompanying pre-print☆94Jul 24, 2025Updated last year
- Code for humanization of antibody and nanobody☆94Aug 28, 2025Updated last year
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆420Updated this week
- ☆147Jun 16, 2026Updated 2 months ago
- Pytorch reimplementation of AlphaFold3☆28May 7, 2026Updated 3 months ago
- Potts model-based protein sequence design☆111Jul 1, 2026Updated 2 months ago
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆87Jul 23, 2026Updated last month
- Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted bind…☆81Jan 15, 2026Updated 7 months ago
- ☆152May 18, 2026Updated 3 months ago
- An Open-source Drug Discovery Engine☆441Aug 16, 2026Updated 2 weeks ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆262Jan 3, 2026Updated 7 months ago
- ☆259Feb 12, 2026Updated 6 months ago
- ☆24Aug 6, 2026Updated 3 weeks ago
- ☆21Oct 26, 2024Updated last year
- Feynman-Kac steering for controllable protein diffusion☆37Aug 16, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆132Oct 30, 2025Updated 10 months ago
- ☆17Mar 19, 2026Updated 5 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆265Mar 26, 2026Updated 5 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆138Jan 28, 2026Updated 7 months ago
- Inference code for RFdiffusion2☆440Apr 3, 2026Updated 4 months ago
- ☆55Apr 1, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago