A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes
☆55Sep 15, 2026Updated last month
Alternatives and similar repositories for PBEE
Users that are interested in PBEE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pretrained METL models with minimal dependencies☆18Sep 16, 2026Updated last month
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆64Aug 5, 2026Updated 2 months ago
- A tool for mapping protein-protein, protein-nucleic acid, and antigen-antibody interactions☆14May 14, 2025Updated last year
- ☆13May 24, 2026Updated 5 months ago
- Python rich client for visual protein Sequence to Structure Analysis☆22Mar 31, 2026Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DrugDomain database☆11Sep 16, 2025Updated last year
- Cyclic peptide binder design using a fragment docking and assembling strategy☆12May 20, 2025Updated last year
- ☆16Jun 11, 2021Updated 5 years ago
- Graph neural network for modeling multispecific antibody functional data☆14Feb 2, 2026Updated 9 months ago
- ☆56Jan 10, 2025Updated last year
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆64Mar 3, 2026Updated 7 months ago
- AlphaFold-initiated replica exchange protein docking☆95Jun 5, 2025Updated last year
- Official Implementation of IgGM☆237May 28, 2026Updated 5 months ago
- A tool for accurate protein complex structure prediction using diverse experimental restraints. (JAX version)☆40Jul 11, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer☆44Oct 9, 2024Updated 2 years ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆16Feb 26, 2025Updated last year
- ☆546Oct 22, 2026Updated last week
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆302Apr 24, 2026Updated 6 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆100Jun 11, 2025Updated last year
- Improved antibody structure-based design using inverse folding☆177Updated this week
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆26Jul 18, 2025Updated last year
- Generate customized voxel representations of protein-ligand complexes using GPU.☆11Sep 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Nov 10, 2023Updated 2 years ago
- ☆13Sep 29, 2023Updated 3 years ago
- ☆11Mar 27, 2026Updated 7 months ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆14Dec 13, 2024Updated last year
- Plugin for folding sequences directly in PyMOL☆119Aug 4, 2025Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆49Sep 28, 2026Updated last month
- Masif seed paper repository☆174Sep 22, 2025Updated last year
- Predict the binding affinity of protein-protein complexes from structural data☆203Oct 3, 2025Updated last year
- ☆13Jul 11, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆98Nov 25, 2025Updated 11 months ago
- ☆13Jun 7, 2025Updated last year
- Humanness of de-novo designed proteins☆48May 19, 2025Updated last year
- Machine learning-driven antibody design☆66Jul 5, 2023Updated 3 years ago
- Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!☆110Feb 18, 2025Updated last year
- LIVIA (Local Interaction VIsualization and Analysis) — Analyze and visualize protein interaction interfaces from structure predictions. B…☆27Oct 23, 2026Updated last week
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated 7 months ago