pinellolab / pyrovelocity
π«robabilistic modeling of RNA velocity ⬱
β47Updated this week
Alternatives and similar repositories for pyrovelocity:
Users that are interested in pyrovelocity are comparing it to the libraries listed below
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing dataβ24Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inferenceβ38Updated 6 months ago
- β35Updated 3 weeks ago
- Code for scKINETICS (ISMB 2023)β21Updated last year
- Geometry-preserving random samplingβ80Updated 5 months ago
- Regulatory networks with Direct Information in pythonβ40Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""β40Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omicsβ51Updated 7 months ago
- β26Updated last year
- Dynamic models for single-cell RNA-seq time series.β40Updated 6 years ago
- A python package for chromVARβ27Updated last year
- Quasilinear data representations for single-cell omics data analysisβ42Updated last year
- β42Updated 5 months ago
- Molecular interactions inference from single-cell multi-omics dataβ22Updated 4 months ago
- Single-Cell Clustering Assessment Frameworkβ99Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.β27Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitionsβ57Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstructionβ86Updated this week
- scOpen: single-cell open chromatin analysis via NMF modellingβ26Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime dataβ25Updated last week
- Benchmark of GRNs using the GRETA pipelineβ23Updated last week
- Python implementation of Milo for differential abundance testing on KNN graphβ63Updated last month
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiensβ41Updated last year
- β36Updated 6 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.β56Updated 11 months ago
- β41Updated this week
- pseudobulking on an AnnData objectβ29Updated 2 weeks ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.β66Updated 2 weeks ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasetsβ36Updated 11 months ago