pinellolab / pyrovelocity
π«robabilistic modeling of RNA velocity ⬱
β46Updated this week
Alternatives and similar repositories for pyrovelocity:
Users that are interested in pyrovelocity are comparing it to the libraries listed below
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β41Updated 2 years ago
- Multimodal Data (.h5mu) implementation for Pythonβ81Updated 3 months ago
- Code for scKINETICS (ISMB 2023)β21Updated last year
- β34Updated 8 months ago
- Single-Cell Clustering Assessment Frameworkβ97Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.β54Updated 9 months ago
- β37Updated 10 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasetsβ24Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omicsβ51Updated 5 months ago
- β57Updated 3 years ago
- β26Updated last year
- Automated cell filtering for single-cell RNA sequencing dataβ24Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomicsβ28Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""β40Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inferenceβ37Updated 3 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.β27Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics dataβ21Updated 2 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.β47Updated 6 months ago
- scOpen: single-cell open chromatin analysis via NMF modellingβ25Updated last year
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstructionβ83Updated 2 weeks ago
- Molecular interactions inference from single-cell multi-omics dataβ22Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysisβ42Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectoriesβ43Updated 2 years ago
- Dorothea package in Pythonβ11Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time pointsβ46Updated 6 months ago
- β34Updated 4 months ago
- Dynamic models for single-cell RNA-seq time series.β39Updated 6 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.β60Updated 8 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Setsβ20Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.β67Updated last year