pinellolab / pyrovelocity
π«robabilistic modeling of RNA velocity ⬱
β47Updated this week
Alternatives and similar repositories for pyrovelocity:
Users that are interested in pyrovelocity are comparing it to the libraries listed below
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 2 years ago
- Code for scKINETICS (ISMB 2023)β21Updated last year
- A python package for chromVARβ27Updated last year
- Dynamic models for single-cell RNA-seq time series.β40Updated 6 years ago
- β35Updated last month
- β42Updated 5 months ago
- Epigenomics Program pipeline to analyze SHARE-seq data.β20Updated 3 weeks ago
- Regulatory networks with Direct Information in pythonβ40Updated 2 years ago
- β37Updated 3 weeks ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inferenceβ38Updated 7 months ago
- Capybara: A computational tool to measure cell identity and fate transitionsβ58Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstructionβ86Updated 2 weeks ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.β49Updated 9 months ago
- Gene regulatory network inference for RNA velocity and pseudotime dataβ26Updated last month
- Benchmark of GRNs using the GRETA pipelineβ24Updated last month
- High-definition modeling of chromatin + transcriptomics dataβ23Updated last week
- Geometry-preserving random samplingβ81Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.β71Updated 3 months ago
- Automated cell filtering for single-cell RNA sequencing dataβ24Updated last year
- Single-Cell Clustering Assessment Frameworkβ101Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.β27Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics dataβ24Updated last week
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiensβ41Updated last year
- Template repository for creating novel models with scvi-toolsβ20Updated 2 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)β30Updated last month
- β59Updated 3 years ago
- Python package to perform normalization and variance-stabilization of single-cell dataβ23Updated last week
- pseudobulking on an AnnData objectβ30Updated last month
- scOpen: single-cell open chromatin analysis via NMF modellingβ26Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.β68Updated 2 weeks ago