rnnh / bioinfo-notebookLinks
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
☆175Updated 4 years ago
Alternatives and similar repositories for bioinfo-notebook
Users that are interested in bioinfo-notebook are comparing it to the libraries listed below
Sorting:
- Step-by-step analysis pipeline for RNA-seq data☆119Updated last year
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆195Updated last week
- ☆197Updated 2 months ago
- Nextflow training material☆171Updated this week
- ☆248Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆329Updated 3 months ago
- Download FASTQ files from SRA or ENA repositories.☆330Updated 2 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆224Updated last week
- Application for making ENCODE Blacklists☆309Updated 4 years ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆269Updated 2 weeks ago
- Analysis of single cell RNA-seq data course☆136Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 9 months ago
- ☆392Updated 3 years ago
- TransDecoder source☆289Updated 8 months ago
- Tool for plotting sequencing data along genomic coordinates.☆294Updated 2 weeks ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- Bioinformatics Workbook repository☆186Updated 3 weeks ago
- Introduction to bulk RNA-seq☆108Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- website for the rnaseq course☆101Updated last week
- ☆151Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆159Updated 2 weeks ago
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆173Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 2 weeks ago