🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
☆207Nov 12, 2020Updated 5 years ago
Alternatives and similar repositories for bioinfo-notebook
Users that are interested in bioinfo-notebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scripts for RNA-Seq analysis☆29Feb 20, 2022Updated 4 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- Various bioinformatics tutorials☆61Sep 22, 2023Updated 3 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆75Aug 6, 2026Updated 2 months ago
- ☆20Mar 11, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- R interface to genome annotation files and the UCSC genome browser☆37Updated this week
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- A repo hosting the combined lectures of a course on Fundamentals of Computational Biology☆14Jul 4, 2023Updated 3 years ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆17May 23, 2023Updated 3 years ago
- Workflow for viral analysis guided by reference☆16Sep 24, 2026Updated 2 weeks ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Aug 6, 2025Updated last year
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- ☆392Oct 1, 2024Updated 2 years ago
- Analysis pipelines for genomic sequencing data☆74Aug 31, 2026Updated last month
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Mar 12, 2018Updated 8 years ago
- Collection of bioinformatics training materials☆1,153Updated this week
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- A curated list of resources for learning bioinformatics.☆522Aug 29, 2026Updated last month
- minimal example implementations for bioinformatics workflow managers☆292Oct 27, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A curated list of awesome Bioinformatics libraries and software.☆4,310Sep 27, 2026Updated last week
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- Work from the book 'Advanced Python for Biologists'☆15Sep 12, 2018Updated 8 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆57Feb 19, 2021Updated 5 years ago
- Readme☆10Mar 15, 2020Updated 6 years ago
- repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training☆73Oct 1, 2026Updated last week
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated 2 years ago
- ☆18Nov 26, 2023Updated 2 years ago
- ☆391Sep 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28May 28, 2026Updated 4 months ago
- ☆17Jun 17, 2021Updated 5 years ago
- Sphinx documentation source for a computational genomics tutorial.☆36Dec 25, 2020Updated 5 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,383Updated this week
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Feb 14, 2022Updated 4 years ago
- Genome Assembly and Annotation Service code☆219Feb 27, 2026Updated 7 months ago