Alternatives and similar repositories for SpliceAI

Users that are interested in SpliceAI are comparing it to the libraries listed below

• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆328Updated 2 weeks ago
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆246Updated 3 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆405Updated 3 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆859Updated last year
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆714Updated 3 years ago
• milaboratory / mixcr
  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
  ☆379Updated 2 weeks ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆272Updated 7 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆317Updated 2 weeks ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆450Updated last year
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆362Updated this week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆682Updated 6 months ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆478Updated 4 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆492Updated 2 months ago
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆428Updated last month
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆395Updated 3 weeks ago
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆303Updated 6 months ago
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆516Updated 3 weeks ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆386Updated 6 months ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆238Updated 11 months ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆392Updated 3 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆593Updated last year
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆289Updated last year
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆751Updated 5 months ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆523Updated last year
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆535Updated 5 months ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆201Updated 5 years ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆377Updated last week
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆553Updated 5 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆349Updated last month
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆382Updated last month