Alternatives and similar repositories for SpliceAI:

Users that are interested in SpliceAI are comparing it to the libraries listed below

• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆596Updated 10 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆797Updated 8 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆400Updated 2 months ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆421Updated this week
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆325Updated last month
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆497Updated 4 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆407Updated 8 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆540Updated 8 months ago
• pcingola / SnpEff
  ☆264Updated last month
• milaboratory / mixcr
  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
  ☆344Updated last week
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 7 months ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆430Updated last week
• usadellab / Trimmomatic
  ☆238Updated 9 months ago
• Illumina / strelka
  Strelka2 germline and somatic small variant caller
  ☆366Updated 3 years ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆396Updated 11 months ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆316Updated this week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆313Updated 2 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆410Updated 2 months ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆703Updated last week
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆586Updated this week
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆272Updated 9 months ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆288Updated last year
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆494Updated this week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆495Updated last year
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆223Updated last month
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆394Updated this week
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆184Updated 2 weeks ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆581Updated last week
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆386Updated 3 weeks ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆234Updated this week