michaelkyu / ddotLinks
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
โ19Updated 6 years ago
Alternatives and similar repositories for ddot
Users that are interested in ddot are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- API for linked biological knowledgeโ66Updated 3 years ago
- Ontology cross-reference and mapping serviceโ19Updated 6 months ago
- BioThings API framework - Making high-performance API for biological annotation dataโ48Updated this week
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 4 months ago
- ๐ช What's the latest version for each database?โ27Updated last week
- A stitching platform for InXightโ15Updated 7 months ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ137Updated last week
- Github repo for the Experimental Factor Ontology (EFO)โ61Updated this week
- Harmonizing pathway databases using Biological Expression Language (BEL)โ20Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ81Updated last month
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingโ32Updated 8 years ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ73Updated last week
- Communitiy-based Cell Line Ontologyโ18Updated last year
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated last week
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.โ26Updated last year
- OBO-formatted ontologies โ networkx (Python 3)โ148Updated 7 months ago
- A Python package for benchmarking pathway database with functional enrichment and classification methodsโ13Updated 4 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,โฆโ26Updated 2 months ago
- โ24Updated 4 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 4 months ago
- โ26Updated 4 years ago
- Explore the Plant Trait Ontology on the Planteome site.โ47Updated this week
- Data Ingestion Pipeline for Monarchโ57Updated 2 years ago
- python library for working with ontologies and ontology associationsโ131Updated 9 months ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologiesโ17Updated 2 years ago
- HiView: the universal viewer for hierarchical dataโ16Updated 2 years ago
- Project code for BioHackathon Europe 2023.โ18Updated last year
- ๐ก Unified access to OLS instances like from the EBI and TIBโ13Updated this week
- An ontology of cell typesโ184Updated this week