michaelkyu / ddotLinks
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
☆18Updated 5 years ago
Alternatives and similar repositories for ddot
Users that are interested in ddot are comparing it to the libraries listed below
Sorting:
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 4 months ago
- Ontology cross-reference and mapping service☆19Updated last month
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…☆50Updated last month
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆54Updated last month
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆69Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆35Updated this week
- ☆24Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 11 months ago
- 🪝 What's the latest version for each database?☆27Updated this week
- python library for working with ontologies and ontology associations☆129Updated 3 months ago
- Communitiy-based Cell Line Ontology☆18Updated 11 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆15Updated last month
- Github repo for the Experimental Factor Ontology (EFO)☆56Updated 2 weeks ago
- NetworkX-based Python library for representing ontologies☆90Updated last year
- Target prioritization using network representation learning☆11Updated 3 years ago
- HiView: the universal viewer for hierarchical data☆16Updated 2 years ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆42Updated 2 weeks ago
- API for linked biological knowledge☆64Updated 3 years ago
- A stitching platform for InXight☆15Updated 2 months ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆42Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated last week
- phenol: Phenotype ontology library☆23Updated last month
- User-friendly extensions to the Disease Ontology☆20Updated 8 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆127Updated last week
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- ☆18Updated 3 weeks ago
- ☆23Updated 6 months ago