Alternatives and similar repositories for ddot

Users that are interested in ddot are comparing it to the libraries listed below

• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆20Updated last month
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 6 months ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆58Updated last week
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆83Updated 3 weeks ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated this week
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 4 years ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆62Updated last week
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 3 years ago
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 6 months ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆140Updated this week
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆150Updated 10 months ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆33Updated 8 years ago
• AnacletoLAB / RNA-KG
  Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…
  ☆28Updated 4 months ago
• OntoGene / OGER
  ☆24Updated 5 years ago
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated last year
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆27Updated last year
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆42Updated this week
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆49Updated last week
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆133Updated 11 months ago
• Planteome / plant-trait-ontology
  Explore the Plant Trait Ontology on the Planteome site.
  ☆47Updated last week
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 10 months ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆75Updated last week
• hetio / hetnetpy
  Hetnets in Python (relocated from dhimmel/hetio)
  ☆102Updated 5 months ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• NCATSTranslator / Babel
  Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
  ☆12Updated last week
• obophenotype / cell-ontology
  An ontology of cell types
  ☆188Updated this week
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 10 months ago
• idekerlab / hiview
  HiView: the universal viewer for hierarchical data
  ☆16Updated 2 years ago