michaelkyu / ddotLinks
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
โ20Updated 6 years ago
Alternatives and similar repositories for ddot
Users that are interested in ddot are comparing it to the libraries listed below
Sorting:
- ๐ช What's the latest version for each database?โ28Updated this week
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 5 months ago
- Github repo for the Experimental Factor Ontology (EFO)โ62Updated last week
- Ontology cross-reference and mapping serviceโ20Updated 2 weeks ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ138Updated this week
- A stitching platform for InXightโ15Updated 8 months ago
- API for linked biological knowledgeโ66Updated 3 years ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ82Updated last month
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,โฆโ27Updated 3 months ago
- OBO-formatted ontologies โ networkx (Python 3)โ150Updated 9 months ago
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.โ12Updated this week
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ74Updated last week
- Harmonizing pathway databases using Biological Expression Language (BEL)โ20Updated last year
- โ24Updated 5 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ21Updated 4 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.โ27Updated last year
- Communitiy-based Cell Line Ontologyโ18Updated last year
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 5 months ago
- A collection of useful python functions for looking up information and working with the Biolink Modelโ24Updated last week
- BioThings API framework - Making high-performance API for biological annotation dataโ48Updated this week
- PyBioPAX: A python implementation of the BioPAX object modelโ25Updated last year
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated last week
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingโ33Updated 8 years ago
- Data Ingestion Pipeline for Monarchโ57Updated 3 years ago
- Project code for BioHackathon Europe 2023.โ18Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methodsโ13Updated 4 years ago
- HiView: the universal viewer for hierarchical dataโ16Updated 2 years ago
- python library for working with ontologies and ontology associationsโ133Updated 10 months ago
- Map your disease and phenotype terms to the Open Targets platform ontologyโ22Updated last month