fabriziocosta / EDeN
Explicit Decomposition with Neighborhoods python version
☆45Updated 8 months ago
Alternatives and similar repositories for EDeN:
Users that are interested in EDeN are comparing it to the libraries listed below
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- ☆11Updated 7 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 4 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- ☆21Updated 7 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆28Updated 7 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆57Updated 9 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 5 years ago
- Yet Another Motif Discovery Algorithm☆52Updated 6 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆18Updated 2 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Updated 6 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- inferring sequence-structure motifs using deep learning☆37Updated last year
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- ☆51Updated 4 years ago
- Implementation of Fibered Auto-Encoders☆9Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 2 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- Visual Machine Learning of Genome-Phenome Associations☆22Updated 2 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Codes and data for the paper entitled "Learning representations to predict intermolecular interactions on large-scale heterogeneous molec…Updated 8 months ago