philippbayer / submission_checklist

Related projects ⓘ

Alternatives and complementary repositories for submission_checklist

• refresh-bio / SPLASH
  ☆70Updated this week
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆76Updated 4 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆41Updated last month
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆98Updated 2 weeks ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆92Updated 7 months ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆68Updated 7 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆73Updated last week
• nf-core / bamtofastq
  Converts bam or cram files to fastq format and does quality control.
  ☆21Updated last month
• marcpaga / sturgeon
  Sturgeon is a CNS neural network classifier
  ☆32Updated 3 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆111Updated 3 weeks ago
• rcc-uchicago / genetic-data-analysis-2
  RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
  ☆22Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆57Updated 2 months ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆49Updated 3 months ago
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆35Updated 9 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆61Updated 2 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆87Updated this week
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆26Updated 7 months ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆63Updated 5 months ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆78Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆54Updated 2 weeks ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆122Updated last year
• crazyhottommy / scripts-general-use
  ☆16Updated 7 years ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆103Updated 7 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆137Updated last week
• schatzlab / appliedgenomics2022
  Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
  ☆23Updated last year
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆100Updated 4 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆93Updated last month
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆37Updated last month
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆43Updated 7 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆94Updated 5 months ago