philippbayer / submission_checklist

Related projects ⓘ

Alternatives and complementary repositories for submission_checklist

• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆74Updated 2 weeks ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆88Updated this week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆54Updated 3 weeks ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆160Updated last month
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆92Updated 7 months ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆52Updated last year
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆45Updated 4 years ago
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆98Updated 3 weeks ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆49Updated 3 months ago
• refresh-bio / SPLASH
  ☆70Updated last week
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆41Updated last month
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆122Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆74Updated 7 months ago
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆126Updated 6 months ago
• marcpaga / sturgeon
  Sturgeon is a CNS neural network classifier
  ☆32Updated 3 months ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 3 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆61Updated 2 months ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆26Updated 7 months ago
• widdowquinn / ten_great_papers
  Ten great papers for wet lab biologists starting out in computational biology
  ☆50Updated 5 years ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆45Updated 2 weeks ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆49Updated 5 years ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆68Updated 8 months ago
• BIMSBbioinfo / compgen2021
  ☆73Updated 3 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆66Updated last year
• crazyhottommy / The-world-of-faculty
  resources for faculty
  ☆208Updated last year
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆92Updated last month
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆45Updated last month
• schatzlab / appliedgenomics2022
  Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
  ☆23Updated last year
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 5 months ago