Alternatives and similar repositories for submission_checklist

Users that are interested in submission_checklist are comparing it to the libraries listed below

• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆26Updated 8 months ago
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆46Updated 6 months ago
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆40Updated 10 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• benedictpaten / intro_python
  Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
  ☆83Updated this week
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆60Updated 3 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆97Updated last year
• tskit-dev / tsinfer
  Infer a tree sequence from genetic variation data.
  ☆60Updated 2 weeks ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆113Updated last month
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆86Updated 4 months ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 2 months ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆50Updated last month
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 3 weeks ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated last month
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆51Updated 8 months ago
• will-rowe / genome-sketching
  online notebooks for a review of genome sketching
  ☆60Updated 6 years ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆43Updated last year
• schatzlab / appliedgenomics2022
  Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
  ☆22Updated 2 years ago
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated last week
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆27Updated last month
• gao-lab / CPC2_standalone
  Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
  ☆25Updated 4 years ago