mrvollger / SmkTemplateLinks
A template repository for snakemake workflows.
☆40Updated 10 months ago
Alternatives and similar repositories for SmkTemplate
Users that are interested in SmkTemplate are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 4 months ago
- ☆50Updated 3 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Simple pileup-based variant caller☆93Updated 5 months ago
- python plotly Circos from VCF☆40Updated last year
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- A local-haplotagging-based small and structural variant caller☆86Updated last week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 11 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆76Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 8 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- long read RNA-seq quantification☆90Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- ☆24Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Fast and accurate coordinate conversion between assemblies☆116Updated last week
- ☆35Updated 2 years ago
- vembrane filters VCF records using python expressions☆65Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆112Updated 3 months ago
- ☆32Updated 2 weeks ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆26Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago