mrvollger / SmkTemplateLinks
A template repository for snakemake workflows.
☆40Updated 11 months ago
Alternatives and similar repositories for SmkTemplate
Users that are interested in SmkTemplate are comparing it to the libraries listed below
Sorting:
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆87Updated 3 weeks ago
- Simple pileup-based variant caller☆93Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆50Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆78Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- ☆34Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated last month
- long read RNA-seq quantification☆91Updated 2 weeks ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated this week
- python plotly Circos from VCF☆40Updated last year
- Long-read splice alignment with high accuracy☆63Updated last year
- k-mer learning materials☆80Updated 8 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆45Updated 4 months ago
- ☆24Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Copy number caller for long read data including SNV utilization☆68Updated 7 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- The Flexible Demultiplexer☆35Updated 2 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 8 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- A program for assessing the T2T genome continuity☆89Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated this week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated last month