Alternatives and similar repositories for appliedgenomics2022

Users that are interested in appliedgenomics2022 are comparing it to the libraries listed below

• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 2 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated 3 months ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated 9 months ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆36Updated 2 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated last year
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆55Updated this week
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 11 months ago
• refresh-bio / SPLASH
  ☆82Updated 2 months ago
• everestial / VCF-Simplify
  A python parser to simplify and build the VCF (Variant Call Format).
  ☆49Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆32Updated last month
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated 8 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 months ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆68Updated 4 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆49Updated last year
• mlin / PhyloCSF
  Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
  ☆69Updated 2 years ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 5 years ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆71Updated 3 weeks ago
• fls-bioinformatics-core / GFFUtils
  Python module and utility programs for working with GFF files
  ☆33Updated 4 years ago
• CshlSiepelLab / phast
  PHAST
  ☆76Updated this week
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆36Updated 4 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆76Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆89Updated 3 months ago
• jts / methylation-analysis
  ☆45Updated 8 years ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆71Updated 5 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆80Updated last month