schatzlab / appliedgenomics2022

Related projects ⓘ

Alternatives and complementary repositories for appliedgenomics2022

• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆52Updated 3 years ago
• LiLabAtVT / CompareTranscriptome
  repository of scripts for comparative transcriptome analysis
  ☆18Updated 5 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆36Updated 4 months ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆24Updated 5 years ago
• billzt / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆47Updated 4 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆41Updated last month
• Juke34 / awesome-awesomeness-bioinformatics
  A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
  ☆36Updated 3 weeks ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆69Updated 11 months ago
• ISUgenomics / common_scripts
  my bin directory
  ☆43Updated this week
• skovaka / uncalled4
  ☆43Updated last month
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 2 years ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆46Updated 2 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆48Updated 2 years ago
• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 3 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 3 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆26Updated 2 weeks ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆45Updated 3 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆25Updated last year
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆50Updated last month
• CshlSiepelLab / phast
  PHAST
  ☆68Updated last year
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆47Updated last month
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆82Updated 6 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆38Updated last year
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆68Updated 4 months ago
• refresh-bio / SPLASH
  ☆70Updated this week
• paulstothard / helpful_links
  Links to resources related to bioinformatics and data analysis.
  ☆22Updated last month
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆33Updated last year