Alternatives and similar repositories for appliedgenomics2022

Users that are interested in appliedgenomics2022 are comparing it to the libraries listed below

• kocherlab / pipemake

  View on GitHub
  A pipeline creation tool using Snakemake
  ☆12Dec 10, 2025Updated 2 months ago
• sanger-pathogens / nano-rave

  View on GitHub
  Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…
  ☆13Aug 9, 2024Updated last year
• senzhaocode / FuSViz

  View on GitHub
  A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
  ☆13Oct 7, 2025Updated 4 months ago
• junjunlab / BioSeqUtils

  View on GitHub
  Extract Sequence from Genome According to Annotation File
  ☆39Apr 16, 2025Updated 9 months ago
• LiLabAtVT / CompareTranscriptome

  View on GitHub
  repository of scripts for comparative transcriptome analysis
  ☆19Apr 10, 2019Updated 6 years ago
• gagneurlab / RNAseq-ASHG

  View on GitHub
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Mar 7, 2022Updated 3 years ago
• J35P312 / FindSV

  View on GitHub
  Structural variant pipeline
  ☆18Jun 25, 2020Updated 5 years ago
• schmeing / gapless

  View on GitHub
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Mar 5, 2023Updated 2 years ago
• dzhang32 / dasper

  View on GitHub
  Detecting Aberrant Splicing Events from RNA-sequencing data
  ☆16Dec 10, 2024Updated last year
• dawelab / Ab10-Assembly

  View on GitHub
  B73Ab10 genome assembly methods
  ☆16Jan 21, 2022Updated 4 years ago
• kad-ecoli / python_scripts

  View on GitHub
  scripts for parsing PDB, fasta, and GO
  ☆16Oct 20, 2021Updated 4 years ago
• fanyucai1 / TMB

  View on GitHub
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Dec 10, 2019Updated 6 years ago
• bioinform / ecTMB

  View on GitHub
  ☆18Aug 22, 2021Updated 4 years ago
• SFGLab / ConsensuSV-pipeline

  View on GitHub
  Automatised pipeline of ConsensuSV workflow.
  ☆24Aug 23, 2023Updated 2 years ago
• gencorefacility / r-notebooks

  View on GitHub
  Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
  ☆20Jun 20, 2019Updated 6 years ago
• amvarani / Plant_Annotation_TEs

  View on GitHub
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Jun 10, 2025Updated 8 months ago
• Atvar2 / plotHicGenome

  View on GitHub
  The tools are used for displaying hic signal of genome
  ☆24Jan 4, 2021Updated 5 years ago
• shawnzhangyx / cvdc_scripts

  View on GitHub
  scripts for analyzing the CVDC data.
  ☆20Dec 5, 2019Updated 6 years ago
• Oshlack / Slinker

  View on GitHub
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Jun 13, 2022Updated 3 years ago
• SimoneTiberi / BANDITS

  View on GitHub
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆19Sep 29, 2025Updated 4 months ago
• js2264 / tidyCoverage

  View on GitHub
  ☆23Jan 7, 2026Updated last month
• bartongroup / 2passtools

  View on GitHub
  Two pass alignment for long reads
  ☆22Mar 9, 2021Updated 4 years ago
• YangJianshun / LINKVIEW2

  View on GitHub
  DNA序列比对结果 可视化展示工具
  ☆57Dec 18, 2022Updated 3 years ago
• wangyibin / CPhasing

  View on GitHub
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆87Jan 25, 2026Updated 2 weeks ago
• vierstralab / genome-tools

  View on GitHub
  Processing and plotting tools for genomics data
  ☆22Jan 31, 2026Updated last week
• cwarden45 / DTC_Scripts

  View on GitHub
  Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)
  ☆20Nov 28, 2024Updated last year
• astrazeneca-cgr-publications / JARVIS

  View on GitHub
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆24Jan 8, 2025Updated last year
• crazyhottommy / Machine_learning_drug_discovery

  View on GitHub
  ☆28Apr 5, 2025Updated 10 months ago
• ellenbell / FasTE

  View on GitHub
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Dec 7, 2022Updated 3 years ago
• de-Boer-Lab / CisRegModels

  View on GitHub
  Scripts for building computational models of gene regulation with tensorflow
  ☆27May 3, 2023Updated 2 years ago
• brentp / 450k-analysis-guide

  View on GitHub
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Oct 2, 2014Updated 11 years ago
• zavolanlab / zarp

  View on GitHub
  The Zavolab Automated RNA-seq Pipeline
  ☆36Jan 29, 2026Updated 2 weeks ago
• Accio / AMIDD

  View on GitHub
  Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)
  ☆32Updated this week
• GeorgeSen / EconomicExplanation

  View on GitHub
  本仓库主要用于讨论李俊慧老师的《经济学讲义》、文章以及张五常老师的《经济解释》
  ☆10Jun 2, 2020Updated 5 years ago
• NCBI-Hackathons / drugdisco

  View on GitHub
  A high throughput automated drug discovery pipeline.
  ☆29Mar 16, 2018Updated 7 years ago
• pepebonet / DeepMP

  View on GitHub
  DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
  ☆28Mar 18, 2022Updated 3 years ago
• yywan0913 / SVhawkeye

  View on GitHub
  ☆35Jan 14, 2024Updated 2 years ago
• NCBI-Hackathons / ConsensusML

  View on GitHub
  Machine Learning to Detect Cancer Biomarkers from RNAseq Data
  ☆34Aug 9, 2019Updated 6 years ago
• SouthGreenPlatform / culebrONT

  View on GitHub
  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
  ☆36Apr 4, 2025Updated 10 months ago