Links to resources related to bioinformatics and data analysis.
☆28Oct 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for helpful_links
Users that are interested in helpful_links are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.☆48Jul 4, 2026Updated 4 months ago
- Database of virus RdRp barcode sequences☆11Sep 11, 2026Updated last month
- ☆11Dec 16, 2025Updated 10 months ago
- Annotation pipeline for plant genomes by PGSB☆11Nov 12, 2021Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Jul 22, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 27, 2024Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆22Nov 7, 2025Updated last year
- reference implementation of GA4GH WGS Quality Control Standards☆12Oct 20, 2026Updated 2 weeks ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29May 15, 2026Updated 5 months ago
- LorMe package for R：Lightening One-code Resolving Microbial Ecology Program☆19Oct 30, 2026Updated last week
- Systematic Analysis for Quantification of Expression☆13Jul 22, 2024Updated 2 years ago
- Hail batch pipeline to run SAIGE on CPG's GCP☆12Oct 16, 2025Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- Command-line tool for visualizing batches of prokaryotic genomes☆11Jul 12, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Svirlpool: structural variant detection from long read sequencing by local assembly☆10Oct 11, 2026Updated 3 weeks ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- code repo for mobileOG-db☆52Jul 30, 2026Updated 3 months ago
- genomic alignment similarity search tool☆20Jun 26, 2026Updated 4 months ago
- Low memory usage random access reader for csv and general files☆14Jun 16, 2022Updated 4 years ago
- Repo for Proksee Cmd Line Tools☆31Feb 22, 2023Updated 3 years ago
- MHC-II presentation predictor☆13Aug 11, 2023Updated 3 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆33Updated this week
- Development version of Easyfig☆110Dec 21, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 4 years ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated 3 months ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆28Updated this week
- R Data Exploration for Serratus☆17Mar 29, 2023Updated 3 years ago
- Virtual container environments with Singularity or Shifter☆12Oct 14, 2026Updated 3 weeks ago
- Board InteGrating Metagenome-Assembled Genomes☆10Dec 16, 2025Updated 10 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Best-practice analysis pipeline for mapping reads to a (large) collections of genomes☆13Oct 26, 2026Updated last week
- ☆11Dec 15, 2023Updated 2 years ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- R functions for conversion of genetic data formats☆12May 17, 2023Updated 3 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆13Feb 20, 2026Updated 8 months ago
- ☆38Apr 13, 2024Updated 2 years ago
- ☆10Jan 23, 2021Updated 5 years ago