paulstothard / helpful_links
Links to resources related to bioinformatics and data analysis.
☆26Updated 3 weeks ago
Alternatives and similar repositories for helpful_links
Users that are interested in helpful_links are comparing it to the libraries listed below
Sorting:
- ☆82Updated last year
- Best practices and workflow for genome annotation☆77Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- List of genome assembly tools☆65Updated 2 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆39Updated this week
- Synteny Imager☆62Updated 8 months ago
- my bin directory☆45Updated 6 months ago
- A list of software for pangenomics☆112Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆94Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- convert various features into a GFF-like file for use in genome browsers☆70Updated 2 months ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆23Updated 9 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- An R package designed for drawing gene arrow maps☆77Updated 3 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated last month
- Python programs for processing GFF3 files☆97Updated last year
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 5 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆116Updated last year
- A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).☆27Updated 7 years ago
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 2 weeks ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆104Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆110Updated last year
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago