Links to resources related to bioinformatics and data analysis.
☆28May 5, 2026Updated this week
Alternatives and similar repositories for helpful_links
Users that are interested in helpful_links are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.☆48Oct 25, 2025Updated 6 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 6, 2025Updated last year
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 5 months ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 5 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆31Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Nov 7, 2025Updated 6 months ago
- Systematic Analysis for Quantification of Expression☆14Jul 22, 2024Updated last year
- ☆11May 27, 2024Updated last year
- Development version of Easyfig☆107Dec 21, 2023Updated 2 years ago
- MHC-II presentation predictor☆13Aug 11, 2023Updated 2 years ago
- IPHOMED☆12Mar 30, 2026Updated last month
- Classifying RNAs as lncRNAs by ensemble machine learning algorithms☆10Dec 8, 2022Updated 3 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Oct 21, 2025Updated 6 months ago
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Real time monitor for snakemake☆17Apr 15, 2026Updated 3 weeks ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated last month
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 4 years ago
- ☆37Apr 13, 2024Updated 2 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆23Apr 1, 2026Updated last month
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 11 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parallelised and automated construction of metagenomic classifier databases of different tools☆21Apr 30, 2026Updated last week
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 4 months ago
- ☆10Sep 14, 2023Updated 2 years ago
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆15Updated this week
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- UltimaGenomics repository for workflows compatible with AWS HealthOmics☆29Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 6 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- RSV-A lineage definitions and proposals☆14Nov 9, 2025Updated 6 months ago
- Graphical Representation of Ancestral Sequence Predictions☆13Mar 6, 2023Updated 3 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆28Apr 14, 2026Updated 3 weeks ago
- ☆21May 27, 2024Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆57Mar 25, 2026Updated last month