Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
☆48Jul 4, 2026Updated last month
Alternatives and similar repositories for helpful_commands
Users that are interested in helpful_commands are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Links to resources related to bioinformatics and data analysis.☆28Jul 23, 2026Updated 3 weeks ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Mar 20, 2023Updated 3 years ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated 11 months ago
- Somatic variant identification from unpaired samples☆16Jan 31, 2017Updated 9 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, GWAS, etc.☆17Aug 4, 2026Updated last week
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Jun 27, 2025Updated last year
- Curriculum Vitae☆14Jul 26, 2026Updated 2 weeks ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago
- Repo for Proksee Cmd Line Tools☆30Feb 22, 2023Updated 3 years ago
- For distributing patric related code☆27Dec 19, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 4 months ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- ☆10Mar 25, 2025Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆34Updated this week
- Computational Statistics with R☆25Updated this week
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated 2 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆19Dec 18, 2025Updated 7 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆55Mar 2, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- LorMe package for R:Lightening One-code Resolving Microbial Ecology Program☆18Jul 20, 2026Updated 3 weeks ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- CGView.js creates interactive circular and linear genome maps.☆47Jul 9, 2026Updated last month
- The Ross-Ibarra's lab documentation☆27Aug 4, 2022Updated 4 years ago
- This repository is part of a project which seeks to build DIY deep fakes' models from scratch. Also it's part of an article that explains…☆14Feb 27, 2021Updated 5 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆109Jan 22, 2026Updated 6 months ago
- Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)☆13May 12, 2026Updated 3 months ago
- ☆14Jan 8, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html☆14May 29, 2017Updated 9 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- ☆12May 17, 2022Updated 4 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago