Alternatives and similar repositories for helpful_commands

Users that are interested in helpful_commands are comparing it to the libraries listed below

• enormandeau / Scripts
  Collection of various scripts
  ☆82Updated last month
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆79Updated 7 months ago
• paulstothard / helpful_links
  Links to resources related to bioinformatics and data analysis.
  ☆27Updated 3 months ago
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆52Updated last month
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated 4 months ago
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆41Updated 8 months ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆94Updated 6 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆121Updated last year
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆80Updated last month
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆92Updated last month
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆93Updated last year
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆96Updated 2 weeks ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆66Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆118Updated 2 years ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆141Updated 3 weeks ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆95Updated this week
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆101Updated last year
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆153Updated last month
• ZhihaoXie / awesome-bioinformatics-tools
  A curated list of awesome Bioinformatics software, tools and resources
  ☆31Updated 6 years ago
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆107Updated last year
• lskatz / awesome-bioinformatics-jobs
  Resources for bioinformatics jobs
  ☆52Updated 4 months ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆80Updated last month
• fmalmeida / bacannot
  Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
  ☆103Updated 7 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆86Updated 3 weeks ago
• Trinotate / Trinotate
  Trinotate source code
  ☆84Updated last year
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last month
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆59Updated 2 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆65Updated 5 months ago