paulstothard / helpful_commandsLinks
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
☆44Updated 10 months ago
Alternatives and similar repositories for helpful_commands
Users that are interested in helpful_commands are comparing it to the libraries listed below
Sorting:
- Links to resources related to bioinformatics and data analysis.☆27Updated 2 weeks ago
- A catalogue of available long read sequencing data analysis tools☆78Updated 3 months ago
- ☆35Updated last month
- Best practices and workflow for genome annotation☆77Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated this week
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- resources for bioinformatics education☆84Updated 3 weeks ago
- Small variant calling for haploid samples☆38Updated last month
- Webin command line submission program.☆33Updated 2 months ago
- An R package designed for drawing gene arrow maps☆79Updated last month
- A dotplot generator for large chromosomes☆42Updated last year
- Interactive quality assessment of genome assemblies☆99Updated 3 weeks ago
- ☆50Updated last year
- my bin directory☆45Updated 6 months ago
- Nextflow workflow template repository☆18Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- PacBio BAM toolkit☆43Updated 3 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆105Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated 2 weeks ago
- Collection of various scripts☆81Updated last week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆103Updated 2 months ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆29Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated 3 weeks ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆40Updated 2 months ago
- A curated list of awesome Bioinformatics software, tools and resources☆30Updated 6 years ago
- Sphinx documentation source for a computational genomics tutorial.☆34Updated 4 years ago
- ☆40Updated 3 weeks ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆83Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 4 months ago