paulstothard / helpful_commandsLinks
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
☆49Updated last week
Alternatives and similar repositories for helpful_commands
Users that are interested in helpful_commands are comparing it to the libraries listed below
Sorting:
- Links to resources related to bioinformatics and data analysis.☆27Updated 3 months ago
- Best practices and workflow for genome annotation☆78Updated 6 months ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆52Updated 2 weeks ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 3 months ago
- Collection of various scripts☆82Updated last week
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆92Updated last year
- resources for bioinformatics education☆93Updated 5 months ago
- What should perfect bioinformatic tools be like?☆136Updated last month
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆108Updated 4 months ago
- Python programs for processing GFF3 files☆101Updated last year
- A curated list of awesome Bioinformatics software, tools and resources☆31Updated 6 years ago
- Metagenomic classification of long-read sequencing data☆95Updated last month
- Trinotate source code☆84Updated last year
- List of genome assembly tools☆82Updated this week
- Assembly and intrahost/low-frequency variant calling for viral samples☆144Updated last week
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago
- a tool for inferring species tree from sequencing reads☆152Updated last month
- A list of awesome awesomeness related to bioinformatics and associated fields☆41Updated 7 months ago
- my bin directory☆45Updated last month
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated 3 weeks ago
- Bioinformatics Tools☆89Updated last month
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆80Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆113Updated 5 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆106Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago