Alternatives and similar repositories for helpful_commands:

Users that are interested in helpful_commands are comparing it to the libraries listed below

• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆73Updated 3 weeks ago
• ridgelab / JustOrthologs
  ☆35Updated last year
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆41Updated last week
• paulstothard / helpful_links
  Links to resources related to bioinformatics and data analysis.
  ☆24Updated this week
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆103Updated 3 weeks ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆110Updated last year
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆68Updated 2 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
  ☆95Updated last week
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆75Updated 3 weeks ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆91Updated last week
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆106Updated 10 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆72Updated last week
• AstrobioMike / bit
  Bioinformatics Tools
  ☆81Updated 2 weeks ago
• ISUgenomics / common_scripts
  my bin directory
  ☆44Updated 2 months ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆51Updated 2 months ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆78Updated 10 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆64Updated this week
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆69Updated last year
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆49Updated 3 months ago
• harvardinformatics / TranscriptomeAssemblyTools
  A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…
  ☆48Updated 10 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated 10 months ago
• vappiah / bacterial-genomics-tutorial
  ☆46Updated last year
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆78Updated this week
• slt666666 / NLRtracker
  NLR annotation tool
  ☆23Updated 10 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• enormandeau / Scripts
  Collection of various scripts
  ☆80Updated last week
• sschmeier / genomics
  Sphinx documentation source for a computational genomics tutorial.
  ☆33Updated 4 years ago
• Juke34 / awesome-awesomeness-bioinformatics
  A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
  ☆39Updated 3 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆30Updated 2 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆44Updated 6 months ago