sanger-pathogens / pathogen-informatics-trainingLinks
☆76Updated 5 years ago
Alternatives and similar repositories for pathogen-informatics-training
Users that are interested in pathogen-informatics-training are comparing it to the libraries listed below
Sorting:
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- Short Read Sequence Typing for Bacterial Pathogens☆145Updated 4 years ago
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆125Updated 2 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 8 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆155Updated 2 weeks ago
- Bioinformatics Tools☆90Updated this week
- Metagenomic classification of long-read sequencing data☆100Updated 2 weeks ago
- Create statistic summary of an Oxford Nanopore read dataset☆131Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆130Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- Antibiotic resistance prediction in minutes☆114Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated 2 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated last month
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 5 years ago
- A user-friendly workflow for phylogenomics☆225Updated last week
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated last year
- Development version of Easyfig☆104Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆143Updated 2 months ago
- Course material for the metagenomics course☆47Updated 3 years ago
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- Python programs for processing GFF3 files☆102Updated last month
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago