☆77Jan 6, 2021Updated 5 years ago
Alternatives and similar repositories for pathogen-informatics-training
Users that are interested in pathogen-informatics-training are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Aug 2, 2023Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆27Jul 13, 2023Updated 3 years ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 3 months ago
- Collection of scripts for bacterial genomics☆49Dec 6, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Short Read Sequence Typing for Bacterial Pathogens☆151Jun 20, 2021Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 7 months ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 10 months ago
- The tool for in silico serotyping☆65Updated this week
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆158Jul 24, 2026Updated 2 months ago
- Public Health England SNP calling pipeline.☆37Sep 4, 2018Updated 8 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆514Jul 17, 2026Updated 2 months ago
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated last month
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- Antibiotic resistance prediction in minutes☆122Mar 27, 2026Updated 6 months ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 4 years ago
- Mycobacterium tuberculosis next generation sequence analysis☆26Oct 11, 2019Updated 6 years ago
- Robs manual for the computational genomics and bioinformatics class.☆272Nov 12, 2024Updated last year
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 8 months ago
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 11 months ago
- ☆150Updated this week
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 9 months ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 8 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 7 months ago
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆83Apr 1, 2018Updated 8 years ago
- Harmonization of AMR predictor tool outputs☆26Jan 14, 2025Updated last year
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Jan 21, 2020Updated 6 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated 2 months ago