oxpig / ABlooper
Tool for modelling the CDRs of antibodies
☆47Updated 2 years ago
Alternatives and similar repositories for ABlooper:
Users that are interested in ABlooper are comparing it to the libraries listed below
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 8 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated 2 years ago
- ☆45Updated last year
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 8 months ago
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- ☆80Updated 5 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆28Updated 2 weeks ago
- Improved antibody structure-based design using inverse folding☆99Updated this week
- Fitness landscapes for antibodies☆63Updated 2 months ago
- ☆68Updated 4 years ago
- ☆34Updated 3 years ago
- ☆34Updated 2 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 6 months ago
- ☆37Updated last year
- ☆74Updated last week
- Bioinformatics and Cheminformatics protocols for peptide analysis☆40Updated 2 years ago
- Efficient manipulation of protein structures in Python☆52Updated 4 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆51Updated last month
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 9 months ago
- ☆100Updated 2 years ago
- Antibody-specific masked language model☆50Updated last year
- A collection of *fold* tools☆20Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 2 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆45Updated 3 months ago
- ☆49Updated 9 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆20Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆51Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year