ywlim / Antibody_deep_learning
Code for the antibody deep learning paper.
☆14Updated 3 years ago
Alternatives and similar repositories for Antibody_deep_learning:
Users that are interested in Antibody_deep_learning are comparing it to the libraries listed below
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 8 months ago
- ☆9Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 9 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 8 months ago
- A domain parser for Alphafold models☆34Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆51Updated last month
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆49Updated 9 months ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆17Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- ☆19Updated 9 months ago
- Making Protein folding accessible to all!☆21Updated last year
- ☆34Updated 2 months ago
- ☆45Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated 3 months ago
- Tools for annotation, processing and ML for antibody sequences☆27Updated this week
- An accurate and efficient protein sequence design approach☆24Updated this week
- ☆68Updated 4 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 7 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆41Updated 4 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆34Updated 3 months ago
- ☆25Updated 7 months ago
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- ☆31Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Repo contains source code of the SurfaceID paper☆21Updated last year