wengong-jin / RefineGNN
☆130Updated 2 years ago
Alternatives and similar repositories for RefineGNN:
Users that are interested in RefineGNN are comparing it to the libraries listed below
- ☆106Updated 2 years ago
- open source repository☆137Updated last year
- Generative Language Modeling for Antibody Design☆148Updated 7 months ago
- ☆205Updated last year
- ☆125Updated last year
- ☆185Updated 7 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated 2 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆98Updated 7 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆203Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆144Updated 4 years ago
- Open source code for TankBind. Galixir Tenchnologies☆153Updated last year
- Database of Interacting Protein Structures (DIPS)☆99Updated last year
- Masif seed paper repository☆152Updated last year
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆94Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆85Updated last year
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆68Updated 2 weeks ago
- An awesome & curated list of docking papers☆110Updated last month
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆93Updated 2 years ago
- AbLang: A language model for antibodies☆138Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆71Updated 4 years ago
- Papers about Structure-based Drug Design (SBDD)☆111Updated 4 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆178Updated 3 weeks ago
- ☆41Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆164Updated 2 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆318Updated last year
- ☆86Updated 2 years ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆83Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆277Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆113Updated last month
- ☆87Updated 6 months ago