Alternatives and similar repositories for RefineGNN

Users that are interested in RefineGNN are comparing it to the libraries listed below

• wengong-jin / abdockgen
  ☆107Updated 2 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆139Updated last year
• BytedProtein / ByProt
  ☆199Updated 11 months ago
• FreyrS / dMaSIF
  ☆217Updated 2 years ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆148Updated 4 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆161Updated 10 months ago
• jertubiana / ScanNet
  ☆130Updated 2 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆214Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆118Updated 6 months ago
• luwei0917 / TankBind
  Open source code for TankBind. Galixir Tenchnologies
  ☆161Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆104Updated 10 months ago
• aws-samples / lm-gvp
  LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
  ☆59Updated last year
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆113Updated 5 months ago
• drorlab / gvp-pytorch
  Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆291Updated 2 years ago
• biochunan / AsEP-dataset
  NeurIPS 2024 Dataset and Benchmark Submission "AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction"
  ☆26Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆93Updated 2 years ago
• IBM / controlled-peptide-generation
  source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…
  ☆105Updated 2 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆102Updated last year
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆342Updated 2 years ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆244Updated last year
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆103Updated last year
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆280Updated 4 years ago
• zaixizhang / Awesome-SBDD
  Papers about Structure-based Drug Design (SBDD)
  ☆120Updated 8 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆96Updated 2 years ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆64Updated 3 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆73Updated 4 years ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆195Updated 4 months ago
• luost26 / 3D-Generative-SBDD
  💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)
  ☆193Updated 2 years ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆50Updated last year