wengong-jin / RefineGNN
☆127Updated 2 years ago
Alternatives and similar repositories for RefineGNN:
Users that are interested in RefineGNN are comparing it to the libraries listed below
- ☆105Updated last year
- ☆176Updated 5 months ago
- open source repository☆135Updated last year
- ☆198Updated last year
- Generative Language Modeling for Antibody Design☆142Updated 5 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆197Updated last year
- ☆121Updated last year
- AbLang: A language model for antibodies☆137Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated 2 weeks ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆133Updated 3 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆83Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 5 months ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆80Updated 10 months ago
- ☆70Updated last year
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆86Updated last year
- ☆81Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆224Updated 10 months ago
- Open source code for TankBind. Galixir Tenchnologies☆153Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆90Updated last month
- An evolutionary context-integrated deep learning framework for protein engineering☆63Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆311Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆69Updated 4 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆149Updated 3 weeks ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆171Updated this week
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆98Updated 2 years ago
- An awesome & curated list of docking papers☆102Updated this week
- Masif seed paper repository☆145Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆80Updated last year