wengong-jin / RefineGNN
☆128Updated 2 years ago
Alternatives and similar repositories for RefineGNN:
Users that are interested in RefineGNN are comparing it to the libraries listed below
- ☆106Updated 2 years ago
- open source repository☆136Updated last year
- Generative Language Modeling for Antibody Design☆146Updated 6 months ago
- ☆181Updated 6 months ago
- ☆203Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆103Updated last month
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆91Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 6 months ago
- Papers about Structure-based Drug Design (SBDD)☆108Updated 4 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆203Updated last year
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆176Updated this week
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆141Updated 3 years ago
- ☆124Updated last year
- AbLang: A language model for antibodies☆138Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆84Updated last year
- ☆40Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆317Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆272Updated 2 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆89Updated 2 years ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆82Updated 11 months ago
- Antibody-Antigen Docking and Affinity Benchmark☆71Updated 4 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …