dahjan / DMS_opt
☆68Updated 4 years ago
Alternatives and similar repositories for DMS_opt:
Users that are interested in DMS_opt are comparing it to the libraries listed below
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- ☆19Updated 3 weeks ago
- ☆62Updated 3 years ago
- Public repository describing training and testing of AntiBERTa.☆58Updated 2 years ago
- ☆45Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated 2 weeks ago
- Fitness landscapes for antibodies☆68Updated 3 months ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆34Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆50Updated 4 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- ☆76Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆70Updated 6 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆95Updated 3 months ago
- Transformer Based Language Model for Peptide Property Prediction☆45Updated 9 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆50Updated 5 months ago
- ☆48Updated 10 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- Antibody-specific masked language model☆53Updated last year
- Code for humanization of antibody and nanobody☆39Updated 5 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆54Updated 2 months ago
- ☆20Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Efficient implementatin of ESM family.☆55Updated 3 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- ☆40Updated last month
- ☆49Updated last month
- An antibody-specific language model focusing on NGL prediction☆27Updated 8 months ago
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago