simomarsili / pcdhitLinks
Python interface to cd-hit
☆10Updated 6 years ago
Alternatives and similar repositories for pcdhit
Users that are interested in pcdhit are comparing it to the libraries listed below
Sorting:
- Predict the structure of immune receptor proteins☆57Updated last year
- ☆50Updated 2 years ago
- pyFoldX: python bindings for FoldX.☆51Updated 4 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- ☆71Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆86Updated last year
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆28Updated last year
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆28Updated last week
- ☆20Updated 3 years ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Updated 4 months ago
- Consolidated repository to perform RLXF☆35Updated last month
- dMaSIF implementation for google colab☆34Updated 2 years ago
- ☆21Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆30Updated 2 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Ultra-fast in-silico structure mutation☆35Updated 7 months ago
- Template-based protein design with Raygun☆76Updated last week
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 11 months ago
- predict stability change upon mutation☆28Updated last year
- Generative method to design novel proteins using a diffusion model☆43Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 5 months ago
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 7 months ago
- ☆71Updated 8 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆109Updated last year
- ☆35Updated 4 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago