simomarsili / pcdhitLinks
Python interface to cd-hit
☆10Updated 6 years ago
Alternatives and similar repositories for pcdhit
Users that are interested in pcdhit are comparing it to the libraries listed below
Sorting:
- Predict the structure of immune receptor proteins☆59Updated last year
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆36Updated 2 weeks ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated last year
- ☆33Updated last year
- Consolidated repository to perform RLXF☆36Updated this week
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- Generative diverse protein backbones by protein language model☆34Updated 3 months ago
- pyFoldX: python bindings for FoldX.☆54Updated 4 years ago
- Protein Design by Machine Learning guided Directed Evolution☆47Updated last month
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated 4 months ago
- Template-based protein design with Raygun☆76Updated last week
- Design data and process for the AdaptyvBio protein design competition☆10Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- ☆21Updated last year
- dMaSIF implementation for google colab☆36Updated 2 years ago
- ☆74Updated last year
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆21Updated 2 years ago
- ☆51Updated 2 years ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Updated 6 months ago
- ☆16Updated 11 months ago
- Ultra-fast in-silico structure mutation☆36Updated 10 months ago
- predict stability change upon mutation☆30Updated last year
- ☆36Updated last year
- ☆16Updated this week
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- Directed evolution of proteins in sequence space with gradients☆94Updated 3 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆27Updated 2 years ago