oxpig / ParagraphLinks
Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
☆37Updated 2 years ago
Alternatives and similar repositories for Paragraph
Users that are interested in Paragraph are comparing it to the libraries listed below
Sorting:
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- ☆71Updated 4 years ago
- Antibody-specific masked language model☆57Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆44Updated last month
- ☆48Updated 2 years ago
- Fitness landscapes for antibodies☆80Updated last week
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆27Updated last year
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- AlphaBind code + model accompanying pre-print☆71Updated last month
- ☆46Updated 7 months ago
- code for IDR binding paper 2025☆46Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆64Updated last month
- ☆86Updated 3 weeks ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- AlphaFold-initiated replica exchange protein docking☆84Updated 2 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆54Updated 8 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- ☆109Updated 2 months ago
- ☆74Updated 6 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆74Updated last week
- Predict the structure of immune receptor proteins☆150Updated 6 months ago
- Official repository of GENzyme☆54Updated 8 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆141Updated last week
- Active Learning-Assisted Directed Evolution for Protein Engineering☆65Updated 9 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆62Updated last month
- ☆86Updated 2 years ago
- ☆33Updated 4 months ago