AmeyaHarmalkar / therMLLinks
The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
☆10Updated last year
Alternatives and similar repositories for therML
Users that are interested in therML are comparing it to the libraries listed below
Sorting:
- Making Protein folding accessible to all!☆22Updated last year
- ☆36Updated this week
- Scores for Hydrophobicity and Charges based on SASAs☆34Updated last month
- ☆26Updated last week
- ☆27Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆41Updated last week
- Modelling protein conformational landscape with Alphafold☆51Updated 2 weeks ago
- Physical energy function for protein sequence design☆31Updated 2 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆63Updated 3 weeks ago
- ☆29Updated 11 months ago
- Explicit crosslinks in AlphaFold 3☆22Updated 4 months ago
- ☆20Updated 3 years ago
- ☆28Updated 6 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 2 years ago
- ☆19Updated 9 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year
- ☆70Updated 4 months ago
- ☆39Updated last month
- ☆33Updated last year
- code for IDR binding paper 2025☆39Updated 5 months ago
- Kuhlman Lab Installation of AlphaFold3☆29Updated 2 months ago
- An accurate and efficient protein sequence design approach☆24Updated 4 months ago
- Some scripts that I keep using over and over.☆19Updated last month
- ☆49Updated 2 weeks ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- PyDock Tutorial☆32Updated 7 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆31Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year