AmeyaHarmalkar / therML
The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
☆7Updated last year
Alternatives and similar repositories for therML:
Users that are interested in therML are comparing it to the libraries listed below
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆29Updated last year
- ☆27Updated 2 years ago
- Kuhlman Lab Installation of AlphaFold3☆25Updated last month
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Making Protein folding accessible to all!☆22Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- ☆26Updated 8 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Repo contains source code of the SurfaceID paper☆22Updated last year
- ☆31Updated last year
- Calculate the RMSD between two protein structures☆12Updated 2 years ago
- ☆18Updated 5 months ago
- PyDock Tutorial☆30Updated 6 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆16Updated last year
- ☆26Updated 2 months ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆18Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated 10 months ago
- Automated construction of protein chimeras and their analysis.☆14Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 9 months ago
- Modelling protein conformational landscape with Alphafold☆47Updated last week
- Code for ApoDock☆20Updated 2 weeks ago
- ☆19Updated 2 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated last month
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆26Updated 2 months ago
- ☆35Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- Some scripts that I keep using over and over.☆18Updated 3 months ago