brennanaba / ABlooper
Tool for modelling the CDRs of antibodies
☆32Updated 2 years ago
Alternatives and similar repositories for ABlooper:
Users that are interested in ABlooper are comparing it to the libraries listed below
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆21Updated 6 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆60Updated last month
- Tool for modelling the CDRs of antibodies☆47Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 6 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆39Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated this week
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- ☆28Updated last year
- ☆42Updated 2 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆30Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 7 months ago
- Adapting protein language models for structure-conditioned design☆34Updated 5 months ago
- ☆36Updated last year
- Improved antibody structure-based design using inverse folding☆86Updated this week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆25Updated 2 weeks ago
- ☆44Updated last year
- ☆72Updated 8 months ago
- Efficient manipulation of protein structures in Python☆50Updated 2 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆35Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆87Updated 5 months ago
- dMaSIF implementation for google colab☆29Updated last year
- ☆97Updated 2 years ago
- Code for humanization of antibody and nanobody☆34Updated last month
- A benchmark for 3D biomolecular structure prediction models☆52Updated last month
- ☆21Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆53Updated this week
- Implementation of Protein Invariant Point Packer (PIPPack)☆31Updated 7 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 7 months ago