Alternatives and similar repositories for binding-ddg-predictor

Users that are interested in binding-ddg-predictor are comparing it to the libraries listed below

• wengong-jin / abdockgen
  ☆107Updated 2 years ago
• jertubiana / ScanNet
  ☆135Updated 5 months ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆75Updated 5 years ago
• wengong-jin / RefineGNN
  ☆130Updated 3 years ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆161Updated this week
• jproney / AF2Rank
  ☆114Updated 2 years ago
• Liuxg16 / GeoPPI
  ☆89Updated 3 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆173Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆121Updated 9 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆97Updated 11 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 7 months ago
• aws-samples / lm-gvp
  LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
  ☆64Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 2 weeks ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆151Updated 2 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆108Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆156Updated 3 weeks ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆68Updated 8 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆225Updated last year
• leeyang / DRfold
  ☆42Updated 2 years ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆115Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆150Updated 2 years ago
• levinthal / Pallatom
  ☆128Updated 6 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆211Updated 3 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆235Updated 4 months ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆101Updated 2 weeks ago
• jcchan23 / GraphSol
  Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…
  ☆76Updated 3 years ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆50Updated 3 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆89Updated 5 months ago
• BytedProtein / ByProt
  ☆206Updated last year