Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data
☆10Apr 20, 2026Updated 2 months ago
Alternatives and similar repositories for genieBPC
Users that are interested in genieBPC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package to wrangle and visualize genomic data in R☆26Feb 10, 2026Updated 4 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆25Jun 19, 2026Updated last week
- Pipeline for generating RNAseq-based cancer patient reports☆13Jun 11, 2026Updated 2 weeks ago
- A script to reorganize 'Want to go' Saved places in Google Maps into separate lists by category.☆11May 14, 2024Updated 2 years ago
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆18Dec 28, 2022Updated 3 years ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 11 months ago
- A Tidy Framework to Hack Gene Expression Signatures☆21Apr 20, 2025Updated last year
- Work In Progress: GitHub API v3.0 implemented in R using the gh package☆18Dec 7, 2023Updated 2 years ago
- Longitudinal Mediation with Modified Treatment Policies☆12Sep 26, 2025Updated 9 months ago
- A ggplot interface for creating clincial trial swimlanes☆16Aug 2, 2022Updated 3 years ago
- Super learner fitting and prediction using mlr3☆12Feb 20, 2025Updated last year
- Code for RStudio Shiny videos☆12Jun 8, 2022Updated 4 years ago
- Get up-to-date data from the Unicode CLDR to support localization tasks☆11Oct 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Doubly-Robust and Efficient Estimators for Survival and Ordinal Outcomes in RCTs Without Proportional Hazards or Odds Assumptions☆11Jun 26, 2025Updated last year
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 6 years ago
- Templating Functions to Use with GitHub Enterprise☆17Jan 28, 2019Updated 7 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆21Oct 17, 2025Updated 8 months ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- A Carpentries-style lesson on RNA-Sequencing☆21May 1, 2023Updated 3 years ago
- Personal blog☆14Nov 9, 2025Updated 7 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Simulation code and results for https://arxiv.org/abs/1705.08527☆12Apr 12, 2022Updated 4 years ago
- Ensemble learning for let truncated high dimensional survival data☆17Dec 8, 2020Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 5 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- An example of bundling webR as part of an application using webpack.☆14Nov 3, 2023Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- for custom file structure templates accessible in R sessions outside the ones they were created in.☆22Nov 10, 2020Updated 5 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆41May 5, 2023Updated 3 years ago
- Tools for Flexible Survival Analysis Using Machine Learning☆18Dec 8, 2025Updated 6 months ago
- Creates CONSORT Diagrams for RCTs☆13Jun 11, 2024Updated 2 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Updated this week
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago