Alternatives and similar repositories for efo

Users that are interested in efo are comparing it to the libraries listed below

• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆81Updated last month
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated this week
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• ga4gh / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆90Updated last week
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 3 months ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆137Updated this week
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated 6 months ago
• monarch-initiative / mondo
  Mondo Disease Ontology
  ☆278Updated this week
• OBOFoundry / purl.obolibrary.org
  A system for managing OBO PURLs
  ☆86Updated 3 weeks ago
• obophenotype / cell-ontology
  An ontology of cell types
  ☆184Updated this week
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆210Updated last week
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 4 months ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆22Updated 2 weeks ago
• Planteome / plant-trait-ontology
  Explore the Plant Trait Ontology on the Planteome site.
  ☆47Updated last week
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated last year
• evidenceontology / evidenceontology
  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…
  ☆50Updated 4 months ago
• oborel / obo-relations
  RO is an ontology of relations for use with biological ontologies
  ☆102Updated last week
• OntoGene / OGER
  ☆24Updated 4 years ago
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆131Updated 9 months ago
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated 2 weeks ago
• jamesaoverton / obo-tutorial
  A tutorial on using Open Biological and Biomedical Ontologies (OBO)
  ☆61Updated 6 years ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆52Updated 4 months ago
• edamontology / edamontology
  EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concept…
  ☆131Updated this week
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆42Updated last week
• obophenotype / ncbitaxon
  Build for NCBITaxon
  ☆30Updated last month
• monarch-initiative / phenopacket-store
  Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
  ☆28Updated this week
• obophenotype / uberon
  An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
  ☆146Updated this week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆195Updated last year