Alternatives and similar repositories for pmparser

Users that are interested in pmparser are comparing it to the libraries listed below

• BioDWH2 / BioDWH2
  BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.
  ☆18Updated last month
• rfhb / ctrdata
  Aggregate and analyse clinical trials data from public registers
  ☆54Updated last week
• rnabioco / nihexporter
  An R data package for NIH EXPORTER data
  ☆15Updated 8 months ago
• ropensci / medrxivr
  Access and search medRxiv and bioRxiv preprint data
  ☆60Updated last month
• OHDSI / Capr
  Cohort definition Application Programming in R
  ☆17Updated 6 months ago
• OHDSI / CohortGenerator
  Cohort Generation for the OMOP Common Data Model
  ☆14Updated this week
• chanzuckerberg / software-mentions
  ☆69Updated 2 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated 2 weeks ago
• ropensci / tidypmc
  Parse full text XML documents from Pubmed Central
  ☆35Updated 5 years ago
• NUSCRIPT / OMOP_to_Graph
  Transform the OMOP model to graph model
  ☆26Updated 11 months ago
• ropensci / dbparser
  Source code for the R package, "dbparser" (i.e. DrugBank Parser)
  ☆63Updated last month
• OHDSI / ROhdsiWebApi
  An R package for interfacing with a WebAPI instance
  ☆10Updated 2 months ago
• fusion-jena / computational-reproducibility-pmc
  ☆11Updated last year
• RomanoLab / comptox_ai
  ComptoxAI - An artificial Intelligence toolkit for computational toxicology
  ☆17Updated 7 months ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆70Updated 3 weeks ago
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆29Updated 4 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆21Updated 3 months ago
• nicholasmfraser / rbiorxiv
  R client for the bioRxiv API (https://api.biorxiv.org/)
  ☆15Updated 4 years ago
• bips-hb / pvm
  A collection of signal detection methods used in the field of pharmacovigilance
  ☆30Updated 9 months ago
• NCATSTranslator / ReasonerAPI
  NCATS Biomedical Translator Reasoners Standard API
  ☆39Updated 2 weeks ago
• raredd / kmdata
  kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials
  ☆15Updated 5 months ago
• massimoaria / pubmedR
  Gathering metadata about publications, patents, grants, clinical trials and policy documents from PubMed database
  ☆44Updated last year
• rsgoncalves / text2term
  a tool for mapping free-text descriptions of entities to ontology terms
  ☆17Updated 5 months ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• greenelab / manubot-gpt-manuscript
  Manuscript describing software for the automated revision of manubot manuscripts.
  ☆17Updated last year
• OntoGene / OGER
  ☆24Updated 4 years ago
• MRCIEU / MELODI-Presto
  A fast and programmatic MELODI
  ☆17Updated last year
• MrMimic / MEDOC
  MEDOC is a free python wrapper to clone MEDLINE into local mySQL database
  ☆24Updated last year
• OHDSI / ShinyDeploy
  Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
  ☆27Updated 9 months ago
• jeremyjyang / BioClients
  Python package for access to online biomedical resources, usually via REST APIs.
  ☆18Updated last month