EBIvariation / CMAT
ClinVar Mapping and Annotation Toolkit
☆19Updated last month
Alternatives and similar repositories for CMAT:
Users that are interested in CMAT are comparing it to the libraries listed below
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated 3 weeks ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 months ago
- ☆38Updated 7 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Python package to annotate and visualize gene fusions.☆61Updated 6 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 2 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- gatk4 RNA variant calling pipeline☆46Updated this week
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- visual analysis of your VCF files☆32Updated 2 years ago
- ☆47Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 4 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated last week
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 3 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆35Updated 2 weeks ago
- BAGEL software☆27Updated last year
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated last week
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆50Updated last month
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆34Updated last week
- ☆10Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆27Updated this week
- Refining the impact of genetic evidence on clinical success☆24Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago