ClinVar Mapping and Annotation Toolkit
☆20Oct 28, 2026Updated this week
Alternatives and similar repositories for CMAT
Users that are interested in CMAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant sequence context analysis tool☆10Jul 5, 2024Updated 2 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- ARA.v1.6.0☆10Jun 9, 2024Updated 2 years ago
- Cookiecutter template for MCP server development with FastMCP☆12Nov 15, 2025Updated 11 months ago
- ☆12Sep 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Agentic plugins to annotate SDRF using Claude; Codex; Cursor; Gemini☆19Oct 26, 2026Updated last week
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 9 years ago
- Monorepo for the Open Targets Platform — a data integration tool for systematic drug target identification and prioritisation☆13Oct 27, 2026Updated last week
- Open source anonymisation engine powering Privatiser. Redacts IPs, API keys, PII, and secrets from text - fully reversible.☆14Aug 28, 2026Updated 2 months ago
- A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the…☆12Sep 11, 2026Updated last month
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- Open Targets python framework for post-GWAS analysis☆60Updated this week
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tau-class — A LaTeX template for research articles, technical/lab reports, academic documentation, and more.☆17Apr 22, 2026Updated 6 months ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated last year
- Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif☆10Aug 13, 2025Updated last year
- Structural variant calling tutorial using long-reads.☆11Sep 30, 2026Updated last month
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- ☆19Jun 1, 2026Updated 5 months ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 6 years ago
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- Emending Alignment of Spliced Transcript Reads☆13Jan 19, 2026Updated 9 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Model Context Protocol server for accessing Reactome pathway and systems biology data.☆12Dec 21, 2025Updated 10 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- ☆29Sep 23, 2019Updated 7 years ago
- ☆12Mar 29, 2025Updated last year
- Protein structure search based on embeddings☆13Oct 25, 2026Updated last week
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- ☆14Apr 25, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 11 months ago
- Protein function prediction based on alphaFold models☆10May 5, 2024Updated 2 years ago
- A library for QC report based on MultiQC framework☆35Updated this week
- Discovery of biological sequence motifs in R☆27Dec 20, 2018Updated 7 years ago