openpaul / fqless
less like viewer for fastq files
☆18Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for fqless
- A set of workflows written in Nextflow for Genome Annotation.☆44Updated 4 months ago
- Tips for Nextflow and cheatsheet for channel operation☆69Updated 3 months ago
- An experimental repo for common snakemake rules and workflows☆46Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- just annotate it, dammit!☆89Updated last year
- Bioinformatics with Unix, bash, Make, Python, and parallel☆21Updated 4 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated 6 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated last year
- An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and settle reads interleaving.☆24Updated this week
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆83Updated this week
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆51Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- ☆42Updated 11 years ago
- functions to analyse sanger sequencing reads in R☆97Updated 7 months ago
- Microbiome analysis☆50Updated last week
- A catalogue of available long read sequencing data analysis tools☆74Updated 2 weeks ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆69Updated last month
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆74Updated 8 months ago
- Maximum likelihood demultiplexing☆46Updated last year
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆21Updated this week
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Updated 6 years ago
- ☆23Updated 6 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated last month
- SHallow shOtGUN profiler☆54Updated 2 years ago
- resources for bioinformatics education☆68Updated 8 months ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 8 months ago
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- BigWig and BAM utilities☆92Updated 7 months ago