Alternatives and similar repositories for fqless

Users that are interested in fqless are comparing it to the libraries listed below

• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated 3 months ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆104Updated 2 months ago
• rdpstaff / classifier
  RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  ☆59Updated 3 years ago
• microbiome / mia
  Microbiome analysis
  ☆54Updated last week
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆83Updated 6 years ago
• dib-lab / dammit
  just annotate it, dammit!
  ☆93Updated 2 years ago
• najoshi / sabre
  ☆63Updated 5 years ago
• inodb / snakemake-workflows
  An experimental repo for common snakemake rules and workflows
  ☆46Updated 10 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 7 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆88Updated this week
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆67Updated 2 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆79Updated last year
• qunfengdong / BLCA
  ☆35Updated 2 years ago
• PF2-pasteur-fr / SARTools
  Statistical Analysis of RNA-Seq Tools
  ☆108Updated 3 months ago
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆94Updated 2 months ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated last month
• AstrobioMike / AstrobioMike.github.io
  Site to help biologists wade their way into bioinformatics.
  ☆35Updated 3 months ago
• NorwegianVeterinaryInstitute / BioinfTraining
  Repository for bioinformatics training at the Norwegian Veterinary Institute
  ☆42Updated 3 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 4 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated last year
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 5 months ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆77Updated 2 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆50Updated 11 months ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 9 months ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆56Updated 5 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆117Updated 2 years ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆41Updated 2 years ago