openpaul / fqless

Related projects: ⓘ

• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆33Updated last year
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆66Updated last month
• microbiome / mia
  Microbiome analysis
  ☆47Updated this week
• EnvGen / snakemake-workflows
  Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
  ☆21Updated 5 years ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆67Updated 6 months ago
• ngs-docs / 2017-ucsc-metagenomics
  Workshop materials for shotgun metagenomics
  ☆36Updated 7 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆45Updated 5 months ago
• kylebittinger / qiimer
  Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R
  ☆18Updated 7 years ago
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆12Updated 3 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆49Updated 2 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆96Updated 5 months ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 4 months ago
• inodb / snakemake-workflows
  An experimental repo for common snakemake rules and workflows
  ☆46Updated 9 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated 4 months ago
• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 3 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆88Updated 11 months ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆40Updated 4 months ago
• Geo-omics / scripts
  Metagenomic pipeline and other general scripts used in the lab.
  ☆34Updated last year
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆56Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆46Updated last year
• joey711 / biom
  Development version of the biom package for R
  ☆24Updated 3 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated 10 months ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last month
• aghozlane / masque
  Metagenomic AnalySis with QUantitative pipEline
  ☆12Updated 5 years ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆34Updated 11 months ago
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆77Updated 5 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆50Updated 11 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆69Updated 2 years ago