inodb / snakemake-workflowsLinks
An experimental repo for common snakemake rules and workflows
☆46Updated 10 years ago
Alternatives and similar repositories for snakemake-workflows
Users that are interested in snakemake-workflows are comparing it to the libraries listed below
Sorting:
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- ☆64Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 4 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 months ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- My bioinfo toolbox☆50Updated last year
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆78Updated 11 years ago
- web documentation for Trinotate☆48Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Updated 2 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- List of IARC bioinformatics pipelines and resources☆56Updated 2 months ago
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Mapped QC analysis program☆43Updated 7 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆33Updated 6 years ago