inodb / snakemake-workflowsLinks
An experimental repo for common snakemake rules and workflows
☆46Updated 10 years ago
Alternatives and similar repositories for snakemake-workflows
Users that are interested in snakemake-workflows are comparing it to the libraries listed below
Sorting:
- Maximum likelihood demultiplexing☆50Updated 9 months ago
- ☆63Updated 5 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Toolkit for processing TAB-delimited format☆62Updated last year
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- ☆78Updated 11 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- List of IARC bioinformatics pipelines and resources☆54Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- ☆23Updated 7 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆93Updated 2 weeks ago
- ☆96Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- ☆35Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago