An experimental repo for common snakemake rules and workflows
☆45Mar 17, 2015Updated 11 years ago
Alternatives and similar repositories for snakemake-workflows
Users that are interested in snakemake-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Nov 15, 2018Updated 7 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Biopet docs☆17Aug 2, 2018Updated 7 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated 2 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- viral-ngs: command line tools and wrappers for processing raw viral genomic data☆196Jun 24, 2026Updated 2 weeks ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- ☆62Aug 4, 2020Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 7 years ago
- ☆40Sep 14, 2016Updated 9 years ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 8 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆10Mar 26, 2026Updated 3 months ago
- use the noise☆15Apr 15, 2020Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 7 years ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Little sequence file utilities meant to work within Unix pipelines☆37Jan 20, 2015Updated 11 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- 上科大刘雪松课题组基因组学分析传承与分享知识库☆15Feb 21, 2020Updated 6 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- Run any CLI tool on a Reproducible Isolated Environment ⚙️⚡☆15Jun 19, 2026Updated 2 weeks ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- ☆13Jan 8, 2020Updated 6 years ago
- ATAC-seq snakemake pipeline☆91Feb 13, 2020Updated 6 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- This is a beginner's tutorial to Snakemake☆70Mar 21, 2016Updated 10 years ago