roblanf / sangeranalyseRLinks
functions to analyse sanger sequencing reads in R
☆103Updated 7 months ago
Alternatives and similar repositories for sangeranalyseR
Users that are interested in sangeranalyseR are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Tools for visualising microbial community amplicon data☆69Updated last week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆120Updated 2 months ago
- R implementation of the LEfSe method☆59Updated this week
- Microbiome analysis☆53Updated this week
- A primer for computational tools to analyze genetics of populations in R☆88Updated 4 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated last month
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last month
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Updated 8 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- ☆63Updated 4 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆82Updated 6 years ago
- Nanopore data analysis in R☆40Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year