tlambert03 / napari-omeroLinks
Browse your OMERO database from within napari.
☆37Updated this week
Alternatives and similar repositories for napari-omero
Users that are interested in napari-omero are comparing it to the libraries listed below
Sorting:
- ☆49Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- native Python dataclasses for the OME data model☆56Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- ☆23Updated 3 weeks ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- A napari plugin for clustering objects according to their properties.☆85Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated 3 weeks ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- ☆12Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆40Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- ☆15Updated 2 years ago
- StarDist plugin for napari☆38Updated 9 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 6 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month