tlambert03 / napari-omeroLinks
Browse your OMERO database from within napari.
☆38Updated this week
Alternatives and similar repositories for napari-omero
Users that are interested in napari-omero are comparing it to the libraries listed below
Sorting:
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- ☆51Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- ☆11Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last month
- ☆15Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆57Updated last week
- native Python dataclasses for the OME data model☆58Updated last month
- Visualizing feature measurements on label images in napari☆10Updated last year
- python tools for BigDataViewer☆22Updated 7 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆95Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆46Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated 2 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 10 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago
- Main tasks for the Fractal analytics platform☆17Updated last week
- dask empowered fast4dreg☆11Updated 8 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆23Updated 4 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- Use Napari Viewer to display CZI images☆11Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated last week