tlambert03 / napari-omeroLinks
Browse your OMERO database from within napari.
☆39Updated 2 weeks ago
Alternatives and similar repositories for napari-omero
Users that are interested in napari-omero are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- ☆51Updated 6 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆28Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆40Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago
- ☆36Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- ☆15Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated this week
- native Python dataclasses for the OME data model☆64Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- StarDist plugin for napari☆39Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- ☆12Updated last year
- ☆13Updated last month
- dask empowered fast4dreg☆15Updated 11 months ago
- Particle tracking by solving linear assignment problem.☆60Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- python tools for BigDataViewer☆22Updated 10 months ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆17Updated 6 months ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated 3 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month