obonyojimmy / nf-parserLinks
nextflow parser
☆9Updated last year
Alternatives and similar repositories for nf-parser
Users that are interested in nf-parser are comparing it to the libraries listed below
Sorting:
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- Multiple sequence alignment browser☆11Updated 2 years ago
- split a FASTA sequence file into shorter sequences☆10Updated 4 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 6 months ago
- De novo genome assembler.☆11Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Add functional variant annotation to MAF file☆11Updated 7 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Variant call adjudication☆16Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- ☆14Updated 5 years ago
- convert CHAIN format to PAF format☆14Updated 7 months ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Pan gGnome Viewer☆10Updated last week
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Align short reads against viral genomes in protein space☆10Updated 7 years ago
- A comprehensive and intelligent clinical phasing tool☆14Updated 2 years ago
- ☆9Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year