FredHutch / map_viruses
Align short reads against viral genomes in protein space
☆9Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for map_viruses
- kaamer - protein identification based on amino acid kmers☆11Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 3 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- ☆19Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- mreps: software for tandem repeat identification in DNA☆13Updated 4 years ago
- ☆18Updated 8 years ago
- Comparative TraDIS analysis☆9Updated last year
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Updated 7 years ago
- blast, shmlast☆21Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 5 months ago
- A swift, versatile phylogenomic and high-throughput sequencing simulator☆8Updated 11 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- in silico plasmid extraction☆13Updated 7 years ago
- stageR package☆11Updated last year
- A utility for splitting mixed origin NGS reads☆10Updated 3 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- ☆12Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last year
- Machine learning use cases for teaching☆13Updated 7 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 4 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆11Updated 3 weeks ago