FredHutch / map_virusesLinks
Align short reads against viral genomes in protein space
☆10Updated 7 years ago
Alternatives and similar repositories for map_viruses
Users that are interested in map_viruses are comparing it to the libraries listed below
Sorting:
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated 3 weeks ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- in silico plasmid extraction☆13Updated 7 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- ☆19Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- blast, shmlast☆22Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- Abbreviate strings to short, unique identifiers☆24Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 8 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Updated 3 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆25Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago