collaborativebioinformatics / nibSVLinks
☆9Updated 3 years ago
Alternatives and similar repositories for nibSV
Users that are interested in nibSV are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆13Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- ☆16Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- ☆16Updated 3 years ago
- ☆14Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- ☆12Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆20Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago