collaborativebioinformatics / nibSV

Related projects ⓘ

Alternatives and complementary repositories for nibSV

• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 weeks ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 2 weeks ago
• abs-tudelft / variant-calling-at-scale
  Scalable and High Performance Variant Calling on Cluster Environments
  ☆10Updated 2 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 8 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆13Updated 5 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• mcfrith / dnarrange
  ☆15Updated 6 months ago
• jts / mbtools
  ☆13Updated last year
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 6 years ago
• gjun / muCNV
  ☆20Updated 11 months ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆13Updated 2 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆20Updated 8 months ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 2 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 3 weeks ago
• DecodeGenetics / LRcaller
  ☆16Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 6 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆11Updated 2 months ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 6 years ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 5 months ago
• wdecoster / surpyvor
  A python wrapper around SURVIVOR
  ☆20Updated 9 months ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago