a-slide / MetaCompore
Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing
☆9Updated 3 years ago
Alternatives and similar repositories for MetaCompore:
Users that are interested in MetaCompore are comparing it to the libraries listed below
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆20Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 8 months ago
- toolkit to process gtf files☆16Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- ☆21Updated last month
- ☆33Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 8 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆17Updated 8 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- ☆17Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- ☆25Updated this week
- Reconstruction of focal amplifications with long reads☆15Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- ☆29Updated 3 years ago