a-slide / MetaCompore
Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing
☆9Updated 3 years ago
Alternatives and similar repositories for MetaCompore:
Users that are interested in MetaCompore are comparing it to the libraries listed below
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 4 months ago
- crab go snap snap☆37Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 10 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- a lexicographically-based GTF/GFF sorter☆33Updated 7 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆49Updated 5 months ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 10 months ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 2 years ago
- ☆32Updated 2 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ☆17Updated 2 years ago
- ☆23Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆17Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago