vinuesa / TIB-filoinfoLinks
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
☆22Updated last month
Alternatives and similar repositories for TIB-filoinfo
Users that are interested in TIB-filoinfo are comparing it to the libraries listed below
Sorting:
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated 6 months ago
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆36Updated 2 months ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆51Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆66Updated last year
- Sydney Phylogenetics Workshop☆62Updated 5 months ago
- An R package designed for drawing gene arrow maps☆79Updated last month
- Course material for the metagenomics course☆44Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 3 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated 2 weeks ago
- ☆49Updated 4 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 4 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆12Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- ☆55Updated 2 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago