vinuesa / TIB-filoinfoLinks
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
☆26Updated 3 weeks ago
Alternatives and similar repositories for TIB-filoinfo
Users that are interested in TIB-filoinfo are comparing it to the libraries listed below
Sorting:
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆12Updated 3 weeks ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆12Updated 9 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- Using ggtree to build phylogenetic trees☆48Updated 9 months ago
- An R package designed for drawing gene arrow maps☆87Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- ☆56Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Sydney Phylogenetics Workshop☆66Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Bioinformatics Tools☆89Updated last week
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆31Updated last week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 7 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆39Updated last month
- Automatic Assembly For The Fungi☆25Updated this week
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 7 months ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated 2 weeks ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆35Updated 6 years ago
- ☆41Updated 4 years ago