EvaYiwenWang / PLSDAbatch_workflow
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PLSDAbatch_workflow
- gutSMASH☆52Updated last month
- ☆30Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆34Updated 7 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Analyses in R and Python Using curatedMetagenomicData☆24Updated 2 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated 7 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- ☆35Updated 11 months ago
- A microbiome analysis toolkit for R☆21Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 8 months ago
- ☆11Updated 4 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆13Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆32Updated this week
- ☆20Updated 4 years ago
- pathway based data integration and visualization☆38Updated 7 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆15Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆32Updated 7 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆27Updated 10 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆22Updated 11 months ago