Alternatives and similar repositories for PLSDAbatch_workflow

Users that are interested in PLSDAbatch_workflow are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 3 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated last year
• mwang87 / q2_metabolomics
  ☆11Updated 6 years ago
• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated last month
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 4 months ago
• jaeyunsung / GMHI_2020
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆36Updated 5 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆42Updated last year
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆31Updated 5 years ago
• zellerlab / siamcat
  R package for Statistical Inference of Associations between Microbial Communities And host phenoType
  ☆57Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆55Updated 7 months ago
• databio2022 / GraphBio
  GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
  ☆33Updated 2 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆63Updated 2 months ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆77Updated last year
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 7 years ago
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆15Updated 3 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆25Updated 2 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆43Updated 9 months ago
• jpquast / ggplate
  Create Layout Plots of Biological Culture Plates and Microplates
  ☆104Updated last week
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆39Updated last year
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆32Updated 3 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 7 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• zhouhj1994 / LinDA
  ☆38Updated 2 years ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated 3 weeks ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated last month