Alternatives and similar repositories for celltrackR

Users that are interested in celltrackR are comparing it to the libraries listed below

• broadchenf / Slideseq
  ☆11Updated 6 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆25Updated this week
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆22Updated 2 years ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 3 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 9 years ago
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last year
• nf-core / molkart
  A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
  ☆12Updated last week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 7 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆25Updated last week
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆74Updated this week
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 3 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆23Updated 8 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆44Updated this week
• pachterlab / voyagerpy
  ☆13Updated 10 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated last year
• blaineylab / OpticalPooledScreens
  ☆13Updated 2 years ago
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆32Updated 10 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆61Updated last year
• HenriquesLab / NanoJ-Fluidics
  Manual, source-code and binaries for the NanoJ-Fluidics project
  ☆50Updated 2 years ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 3 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆14Updated 2 months ago
• akoyabio / phenoptr
  Helper functions for working with inForm data.
  ☆14Updated 3 years ago
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆15Updated last week
• almaan / eggplant
  ☆21Updated 2 years ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆14Updated 6 months ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• gdagstn / borges
  Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
  ☆18Updated last year
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago