Alternatives and similar repositories for celltrackR:

Users that are interested in celltrackR are comparing it to the libraries listed below

• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last week
• fmi-basel / glib-nature2018-materials
  Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"
  ☆11Updated 4 years ago
• blaineylab / OpticalPooledScreens
  ☆13Updated 2 years ago
• scverse / spatialdata-io
  ☆51Updated last week
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆64Updated this week
• mpicbg-scicomp / tissue_miner
  A toolkit to quantify cell dynamics in living tissues
  ☆11Updated 6 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆35Updated last year
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 2 months ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 5 months ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 2 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆17Updated 9 years ago
• almaan / eggplant
  ☆21Updated 2 years ago
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆32Updated 8 months ago
• nygctech / PySeq2500
  Control an Illumina HiSeq 2500 System
  ☆20Updated 4 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆42Updated this week
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last year
• genesofeve / projectR
  ☆62Updated 4 months ago
• HelenaLC / SpatialData
  ☆17Updated 2 weeks ago
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆22Updated 6 months ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆14Updated 4 months ago
• PavlidisLab / rnaseq-pipeline
  RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
  ☆22Updated 3 months ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆28Updated last year
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆25Updated last month
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 9 months ago
• gdagstn / borges
  Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
  ☆18Updated 11 months ago
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆47Updated this week