ingewortel / celltrackRLinks
An R package for the analysis and interpretation of cell migration tracks.
☆14Updated 4 months ago
Alternatives and similar repositories for celltrackR
Users that are interested in celltrackR are comparing it to the libraries listed below
Sorting:
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Updated 4 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 5 months ago
- ☆36Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated 7 months ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 5 years ago
- ☆16Updated last year
- MRtree R implementation☆13Updated 2 years ago
- ☆22Updated 3 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Updated 5 years ago
- A toolkit to quantify cell dynamics in living tissues☆12Updated 7 years ago
- R package for visualization of highly multiplexed imaging data☆34Updated 8 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Example vignette for dotdotdot software☆18Updated 4 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Updated last week
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Updated 4 months ago
- R API and htmlwidget for Vitessce☆44Updated 5 months ago
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Updated 4 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆87Updated 2 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 4 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19Updated 8 months ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- R package for differential discovery analyses in high-dimensional cytometry data☆23Updated last year