bigdatagenomics / bdg-formatsLinks
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
☆40Updated 4 months ago
Alternatives and similar repositories for bdg-formats
Users that are interested in bdg-formats are comparing it to the libraries listed below
Sorting:
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 9 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆84Updated 7 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- Bioinformatics for the Scala programming language☆111Updated last year
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 9 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- Variant calling from sequence reads using cloud computing☆39Updated 11 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 3 months ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Python graph database framework for bioinformatics☆93Updated 3 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 3 months ago
- [Bio in Docker] Symposium 2015☆21Updated 7 years ago
- ☆31Updated 2 weeks ago