ewels / nf-core-rnaseqLinks
See the main fork of this repository here >>>
☆38Updated 2 months ago
Alternatives and similar repositories for nf-core-rnaseq
Users that are interested in nf-core-rnaseq are comparing it to the libraries listed below
Sorting:
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- Deep Variant as a Nextflow pipeline☆30Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 9 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Updated 2 years ago
- Fast fusion detection using kallisto☆80Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- FusionInspector code☆57Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Tools for bam file processing☆55Updated 10 years ago
- ☆51Updated 5 years ago
- ☆78Updated 11 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Updated last year
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- RNAseq analysis pipeline☆26Updated 3 years ago
- BigWig and BAM utilities☆96Updated last year