SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustness
☆13Oct 10, 2025Updated 4 months ago
Alternatives and similar repositories for VaQuERo
Users that are interested in VaQuERo are comparing it to the libraries listed below
Sorting:
- ☆19Nov 24, 2025Updated 3 months ago
- Depth-weighted De-Mixing☆128Updated this week
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 2 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Sep 9, 2021Updated 4 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 2 months ago
- ☆30Mar 6, 2025Updated last year
- Forest Management Tool a C++ library for forest planning.☆16Updated this week
- Results from a model of global SARS-CoV-2 lineage competition☆39Dec 17, 2025Updated 2 months ago
- LaTeX Template Satisfying McMaster Thesis Formatting Requirements☆16May 6, 2014Updated 11 years ago
- Datasets for https://github.com/nextstrain/nextclade☆44Updated this week
- The Dockerfiles for breeDBase☆12Feb 25, 2026Updated last week
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- A Starter Template for SWI-Prolog Projects☆10Jun 1, 2020Updated 5 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- rspatial website using terra☆13Feb 14, 2025Updated last year
- Automated collection of EPO.BIN for Garmin GPS watches; latest download from GitHub in link below.☆10Updated this week
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- A platform for managing the submission and review of research outputs☆10Dec 14, 2022Updated 3 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- A Python package to update the MLST database for the mlst tool.☆18Updated this week
- This is the webpage of the ESGEM-AMR Working Group☆15Updated this week
- ☆11Aug 21, 2018Updated 7 years ago
- Software to make and render molecular movie animations☆11Aug 3, 2019Updated 6 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 3 years ago
- A Go parser for .FBP DSL language from NoFlo☆14Jul 16, 2014Updated 11 years ago
- Trying out the Dataframe Polars library with Delta Lake ... feat Python.☆12Jan 29, 2025Updated last year
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 3 months ago
- The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environme…☆56Jan 23, 2026Updated last month
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 2 years ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆16Sep 30, 2024Updated last year
- Examples on different options for implementing Flow Based Programming☆12Sep 10, 2021Updated 4 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 7 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Mar 2, 2026Updated last week
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated 9 months ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Milton based WebDav interface for iRODS☆12May 9, 2017Updated 8 years ago
- ☆12Jul 21, 2025Updated 7 months ago