fabou-uobaf / VaQuERo
SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustness
☆13Updated this week
Alternatives and similar repositories for VaQuERo
Users that are interested in VaQuERo are comparing it to the libraries listed below
Sorting:
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 8 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- Reorients assembled microbial sequences☆117Updated last month
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Precise host read removal☆95Updated last month
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- ☆82Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated this week
- Sorts amplicons from Nanopore sequencing data based on similarity☆37Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆133Updated this week
- ARG normalization by mapping to the ARO ontology.☆57Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆45Updated last month
- SeqSero2☆35Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆79Updated 2 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated last month
- SC2 variant detection and composition pipeline☆17Updated last year
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 weeks ago
- IS mapping software☆54Updated 3 years ago
- Standard database for the TBProfiler tool☆29Updated 2 months ago
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- A toolbox for comparative genomics.☆103Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 4 months ago
- ☆29Updated 11 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated last month